{
	"Notes": "Notes fields replace commenting, which is not standard in JSON.",
	"Description": "This configuration places 10 molecules in a box with a reflecting center. A bimolecular reaction is defined with a binding and unbinding radius so that a minimum distance between individual molecules is maintained. Molecule locations are recorded. This simulation should take less than 1 second to run on a personal computer.",
	"Output Filename": "accord_sample_crowding",
	"Warning Override": false,
	"Simulation Control": {
		"Number of Repeats": 1,
		"Final Simulation Time": 0.05,
		"Global Microscopic Time Step": 1e-5,
		"Random Number Seed": 1,
		"Max Number of Progress Updates": 100
	},
	"Chemical Properties": {
		"Number of Molecule Types": 1,
		"Diffusion Coefficients": [1e-9],
		"Global Flow Type": "None",
		"Chemical Reaction Specification": [
			{							
				"Notes": "Binding reaction.",
				"Label": "Binding",
				"Is Reaction Reversible?": false,
				"Surface Reaction?": false,
				"Default Everywhere?": true,
				"Exception Regions": [],
				"Reactants": [2],
				"Products": [2],
				"Reaction Rate": 1e-14,
				"Binding Radius": 2e-6,
				"Unbinding Radius": 2e-6
			}
		]
	},
	"Environment":	{
		"Subvolume Base Size": 1e-6,
		"Region Specification": [
			{
				"Notes": "Microscopic box.",
				"Label": "A",
				"Parent Label": "",
				"Shape": "Rectangular Box",
				"Type": "Normal",
				"Anchor Coordinate": [0, 0, 0],
				"Integer Subvolume Size": 1,
				"Is Region Microscopic?": true,
				"Number of Subvolumes Per Dimension": [10, 10, 1]
			},
			{
				"Notes": "Microscopic box.",
				"Label": "B",
				"Parent Label": "A",
				"Shape": "Rectangular Box",
				"Type": "3D Surface",
				"Surface Type": "Outer",
				"Anchor Coordinate": [2e-6, 2e-6, 0],
				"Integer Subvolume Size": 1,
				"Is Region Microscopic?": true,
				"Number of Subvolumes Per Dimension": [6, 6, 1]
			}
		],
		"Actor Specification": [
		{
				"Notes": "Molecule initialization",
				"Is Location Defined by Regions?": true,
				"List of Regions Defining Location": ["A"],
				"Is Actor Active?": true,
				"Start Time": 0,
				"Is There Max Number of Actions?": false,
				"Is Actor Independent?": true,
				"Action Interval": 1e9999,
				"Is Actor Activity Recorded?": true,
				"Random Number of Molecules?": false,
				"Random Molecule Release Times?": false,
				"Release Interval": 0,
				"Slot Interval": 0,
				"Bits Random?": true,
				"Probability of Bit 1": 1,
				"Modulation Scheme": "CSK",
				"Modulation Bits": 1,
				"Modulation Strength": 10,
				"Is Molecule Type Released?": [true]
		},
		{
				"Notes": "Box observer that logs molecule positions",
				"Is Location Defined by Regions?": true,
				"List of Regions Defining Location": ["A"],
				"Is Actor Active?": false,
				"Start Time": 1e-10,
				"Is There Max Number of Actions?": false,
				"Is Actor Independent?": true,
				"Action Interval": 1e-4,
				"Is Actor Activity Recorded?": true,
				"Is Time Recorded with Activity?": false,
				"Is Molecule Type Observed?": [true],
				"Is Molecule Position Observed?": [true]
		}
		]		
	}
}
