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source code for RRS (Regulatory Region Scoring model)

The RRS is a tool for the comparison of regulatory DNA sequences. We have shown that it can detect functional relationships of sequences even if these do not have meaningful alignments. Method and source code were developed by Hashem Koohy.

RRS source files and related files


Perl code which we used to prepare input data for RRS C-code

RRS C-code

header of RRS C-code

Makefile for C-code

R-functions used to analyse RRS results

Sample function calls into R-functions

Sample of Binding Probabilities_1

Sample of Binding Probabilities 2

All of the above files in .zip-format

RRS Package