source code for RRS (Regulatory Region Scoring model)
The RRS is a tool for the comparison of regulatory DNA sequences. We have shown that it can detect functional relationships of sequences even if these do not have meaningful alignments. Method and source code were developed by Hashem Koohy.
RRS source files and related files
Perl code which we used to prepare input data for RRS C-code
R-functions used to analyse RRS results
Sample function calls into R-functions
Sample of Binding Probabilities_1
Sample of Binding Probabilities 2