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Publications

 

  • Koulintchenko M, Vengrova S, Eydmann T, Arumugam P and Dalgaard J. (2012) DNA polymerase <alpha> (swi7) and the flap endonuclease Fen1 (rad2) act together in the S-phase alkylation damage response in S. pombe. Plos One. {In press}
  • Steinacher R, Osman F, Dalgaard J.Z, Lorenz A, Whitby M.C. (2012) The DNA helicase Pfh1 promotes fork merging at replication termination sites to ensure genome stability. Genes and Development {In Press}
  • McFarlane R. J., Al-Zeer, K. & Dalgaard J.Z. (2011) Eukaryotic DNA replication and recombination: an intimate association. In Tech. Abstract
  • Dalgaard, J. Z., Godfrey E. L. & McFarlane R. J. (2011) Eukaryotic Replication Barriers: Where, How and Why. In Tech, Abstract
  • Rhind, N., Chen, Z., Yassour, M., Thompson, D. A. , Haas B. J., Habib, N., Wapinski, I., Roy, S., Lin, M. F., Heiman, D. I., Young, S. K., Furuya, K., Guo, Y., Pidoux, A., Chen, H. M., Robbertse, B., Goldberg, J. M., Aoki, K., Bayne, E. H., Berlin, A. M., Desjardins, C. A., Dobbs, E., Dukaj, L., Fan, L., FitzGerald, M. G., French, C., Gujja, S., Hansen, K., Keifenheim, D., Levin, J. Z., Mosher, R. A., Müller, C. A., Pfiffner, J., Priest, M., Russ, C., Smialowska, A., Swoboda, P., Sykes, S.M., Vaughn, M., Vengrova, S., Yoder, R., Zeng, Q., Allshire, R., Baulcombe, D., Birren, B.W., Brown, W., Ekwall, K., Kellis, M., Leatherwood, J., Levin, H., Margalit, H., Martienssen, R., Nieduszynski, C. A., Spatafora, J. W., Friedman, N., Dalgaard, J.Z., Baumann, P., Niki, H., Regev, A., & Nusbaum, C. (2011) Comparative Functional Genomics of the Fission Yeats. Science, 332(6032):930-936. Abstract
  • Sayrac, E.S., Vengrova, S., Godfrey, E., and Dalgaard, J.Z. (2011) Identification of a novel type of spacer element required for imprinting in fission yeast. PloS Genetics. 7(3):e1001329-e1001328. Abstract
  • Inagawa T, Yamada-Inagawa T, Eydmann T, Mian IS, Wang TS, Dalgaard J.Z. (2009) S. pombe Rtf2 mediates site-specific replication termination by inhibiting replication restart. Proceedings of the National Academy of Sciences of the United States of America. 106(19):7927-7932. Abstract
  • McFalane, R., Mian, S. and Dalgaard, J.Z. (2009) The many facets of the Tim-Tipin protein families’ roles in chromosome biology. Cell Cycle, 9(4):700-705. Abstract
  • Dalgaard, J.Z., Eydmann, T., Koulintchenko, M., Sayrac, S., Vengrova, S. and Yamada-Inagawa, T. (2009) Random and site-specific replication termination. Methods in Molecular Biology. 521, 35-55. Abstract
  • Vengrova S. and Dalgaard J.Z. (2009) High resolution mapping of a stalled replication fork. Methods in Molecular Biology. 521, 215-229. Abstract
  • Vengrova, S. and Dalgaard, J.Z (2009) Editors; Methods in Molecular Biology: DNA Replication. Humana Press.
  • Eydmann, T., Sommariva, E., Inagawa, T., Mian, S., Klar, A.J.S., and Dalgaard, J. Z. (2008) Molecular mechanism of Rtf1-mediated eukaryotic site-specific replication termination. Genetics, 180(1), 27-39. Abstract
  • Yamada-Inagawa, T., Klar, A.J.S. and Dalgaard, J.Z. (2007) S. pombe switches mating-type by the synthesis-dependent strand annealing mechanism. Genetics, 177, 255-265. Abstract
  • Vengrova, S., and Dalgaard, J.Z. (2006). The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides. EMBO Reports 7(1), 59-65. Abstract
  • Sommariva, E., Pellny, T., Karahan, N., Kumar, S., Huberman, J.A. & Dalgaard J.Z. (2005). Schizosaccharomyces pombe Swi1, Swi3 and Hsk1 are components of a novel S-phase response pathway to alkylation damage. Molecular and Cellular Biology 25, 2770-2784. Abstract
  • Torres-Rosell, J., Machín, F., Farmer, S., Jarmuz, A., Eydmann, T., Dalgaard, J.Z., & Aragón, L. (2005). Structural Maintenance of Chromosomes genes SMC5 and SMC6 are required the correct segregation of repetitive regions. Nature Cell Biology 7, 412 - 419. Abstract
  • Vengrova, S., and Dalgaard, J.Z. (2005). The S. pombe imprint: nick or ribonucleotide(s)? Curr. Biol. 15, R326-7. Abstract
  • Vengrova, S., and Dalgaard J.Z. (2004). RNAse-sensitive DNA modification(s) initiates S. pombe mating-type switching. Genes and Development 18, 794-804. Abstract. Also see commentary: H. R. Pilcher (2004). Yeast put through the changes with RNA. Nature 428, 713.
  • Dalgaard, J.Z., and Vengrova, S. (2004). Selective gene expression in multi gene families from yeast to mammals. Science STKE, re17. Abstract
  • Codlin, S., and Dalgaard, J.Z. (2003). Complex mechanism of site-specific DNA replication termination in fission yeast. EMBO Journal 22, 3431-3440. Abstract
  • Varga-Weisz, P.D. and Dalgaard, J.Z. (2002). A mark in the core; silence no more! Molecular Cell, 9: 1154-1156. Abstract
  • Vengrova, S., Codlin, S. and Dalgaard, J.Z. (2002). Molecules in Focus: RTS1 – a polar terminator of replication. International Journal of Biochemistry and Cell biology, 1293, 1-4. Abstract
  • Dalgaard, J.Z., and Klar, A.J.S. (2001). A replication arrest site regulates imprinting essential for fission yeast mating-type switching. Genes and Development, 15, 2060-2068. Abstract
  • Klar, A.J.S. and Dalgaard, J.Z. (2001) Mating-type genes and their switching in yeast. In Encyclopedia of Genetics. (Brenner, S. and Miller, I., eds.) Academic Press Inc.
  • Dalgaard, J.Z., and Klar, A.J.S. (2001) Does S. pombe exploit the intrinsic asymmetry of DNA synthesis to imprint daughter cells for mating-type switching? Trends in Genetics, 17, 153-157. Abstract
  • Dalgaard, J.Z and Klar, A.J.S. (2000) swi1 and swi3 perform imprinting, pausing and termination of DNA replication in S. pombe. Cell 102, 745-751. Abstract. Also see commentaries by: Allshire R. and Bickmore, W. (2000) Pausing for thought on the boundaries of imprinting. Cell 102, 705-708 AND Kidner, C. A. (2000) The link between DNA synthesis and asymmetric division. Trends in Genetics, 16, 543
  • Dalgaard, J.Z., and Klar, A.J.S. (1999) Orientation of DNA replication establishes mating-type switching pattern in S. pombe. Nature 400, 181-184. Abstract
  • Silva, G., Dalgaard, J.Z., Belfort, M. and VanRoey, P. (1999) Crystal Structure of the thermostable archaeal intron encoded endonuclease I-DmoI. Journal of Molecular Biology 286, 1123-1136. Abstract
  • Dalgaard, J. Z., Silva, G., Belfort, M. and VanRoey, P. (1998). Crystallization and preliminary crystallographic analysis of the archaeal intron-encoded endonuclease I-DmoI. Acta Crystallografica D54, 1435-1436. Abstract
  • Klar, A.J., Ivanova, A.V., Dalgaard. J. Z., Bonaduce, M.J., and Grewal, S.I. (1998). Multiple epigenetic events regulate mating-type switching of fission yeast. Novartis Foundation Symposium 214, 87-99. Abstract
  • Dalgaard, J.Z., Kiar, A., Moser, M., Holley, W.R., Chatterjee, A. and Mian, S. (1997). Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the 1-TevIII family. Nucleic Acid Research. 25, 4626-4638. Abstract
  • Derbyshire, V., Wood, D.W., Wu, W., Dansereau, J., Dalgaard, J.Z., and Belfort, M. (1997) Genetic definition of a protein-splicing domain: functional mini-inteins support structure predictions and a model for intein evolution. Proceedings of the National Academy of Sciences of the United States of America. 94, 11466-11471. Abstract
  • Dalgaard, J.Z., Moser, M., Hughey, R. and Mian, S. (1997) Statistical modeling, phylogenetic analysis and structure prediction of a protein splicing domain common to inteins and hedgehog proteins. Journal of Computational Biology, 4, 193-214. Abstract
  • Dalgaard, J.Z., Banerjee, M., and Curcio, M.J. (1996) A novel Tyl-mediated fragmentation method for native and artificial yeast chromosomes reveals that the Mouse Steel gene is a hotspot for Tyl integration. Genetics, 143, 673-683. Abstract
  • Aagaard, C., Dalgaard, J.Z., and Garrett, R.A. (1995) Intercellular mobility and homing of an archaeal rDNA intron confers a selective advantage over intron- cells of Sulfolobus acidocaldarius. Proceedings of the National Academy of Sciences of the United States of America, 92, 12285-12289. Abstract
  • Belfort, M. Coetzee, T., Reeban, M., and Dalgaard, J.Z. (1995) Prokaryotic introns and inteins - a panoply of form and function. Journal of Bacteriology, 177, 3897-3903. Abstract
  • Dalgaard, J.Z., Lykke-Andersen, J., and Garrett, R.A. (1995) Archaeal introns in the rRNA genes of hyperthermophiles. In Protocols of Archaeal Research (Robb, F.T., Sowers, K.R., Schreier, H.J., Fleischmann, E. M., and Place, A. R. , eds.) Cold Spring Harbor Laboratory Press
  • Dalgaard, J.Z., Garrett, R.A., and Belfort, M. (1994). Expression, purification and characterization of I-Dmo I - a thermostable site-specific endonuclease encoded by an archaeal intron. Journal of Biological Chemistry, 269, 28885-28892. Abstract
  • Dalgaard, J.Z. (1994). Mobile introns and intiens - friend or foe. Trends in Genetics, 10, 306-307. Abstract
  • Garrett, R.A., AAgaard, C., Andersen, M., Dalgaard, J.Z., Lykke-Andersen, J., Phan, H.T.N., Trevisanato, S., Østergaard, L., Larsen, N., and Leffers, H. (1994) Archaeal rRNA operons, intron splicing and homing endonucleases, RNA polymerase operons and phylogeny. Systematic and Applied Microbiology, 16, 180-191. Abstract
  • Dalgaard, J.Z., Garrett, R.A., and Kjems, J. (1993) Sequence-specific Thermostable Endonucleases. Patent PCT/DK93/00264
  • Dalgaard, J.Z., and Garrett, R.A. (1993). Archaeal hyper-thermophile genes. In The Biochemistry of Archaea (Kates, M., Kushner, D.J. and Matheson, A. T., eds.), pp. 535-556, New Comprehensive Biochemistry 26, Elsevier Science Publishers
  • Dalgaard. J. Z., Garrett, R. A., and Belfort, M. (1993). A site-specific endonuclease encoded by a typical archaeal intron. Proceedings of the National Academy of Sciences of the United States of America, 90(12), 5414-5417 Also see accompanying commentary by: Doolittle, R. F. (1993). The comings and goings of homing endonucleases and mobile introns. Proceedings of the National Academy of Sciences of the United States of America, 90(12), 5379-5381. Abstract
  • Dalgaard. J. Z., and Garrett, R. A. (1992). Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum. Gene, 121, 103-110. Abstract
  • Kjems, J., Larsen, N., Dalgaard, J.Z., Garrett, R.A., and Stetter, K.0. (1992). Phylogenetic relationships amongst the hyperthermophilic archaea determined from partial 23S rRNA gene sequences. Systematic and Applied Microbiology, 15, 203-208. Abstract
  • Garrett, R.A., Dalgaard. J., Larsen, N., Kjems, J., and Mankin, A.S. (1991) Archaeal rRNA operons. Trends in Biochemical Sciences, 16, 22-26. Abstract