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Publications

  • Mars RAT, Nicolas P, Denham EL and van Dijl JM Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression. Microbiology and Molecular Biology Reviews. 2016 http://mmbr.asm.org/content/80/4/1029.abstract
  • Ploss TN, Reilman E, Monteferrante CG, Denham EL, Piersma S, Lingner A, Vehmaanperä J, Lorenz P, van Dijl JM. Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories. 2016 Mar 29;15(1):57 http://www.ncbi.nlm.nih.gov/pubmed/27026185
  • Garcia De Gonzalo CV, Denham EL*, Mars RAT, Stülke J, van der Donk WA and van Dijl JM. The Phosphoenolpyruvate:Sugar Phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin. Antimicrobial agents and Chemotherapy. 2015 Nov;59(11):6844-54 * shared first authorship http://www.ncbi.nlm.nih.gov/pubmed/26282429
  • Mars RAT, Mendonça K, Denham EL, and van Dijl JM Ribosome remodeling in ethanol-stressed cells of Bacillus subtilis is mediated by a SigB-dependent antisense RNA Biochim Biophys Acta. 2015 Jun 24;1853(10 Pt A):2553-2559. http://www.ncbi.nlm.nih.gov/pubmed/26115952
  • Mars RAT, Nicolas P, Ciccolinia P, Reilman E, Reder A, Schaffer M, Maeder U, Voelker U, van Dijl JM, Denham EL Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis PLoS Genet. 2015 Mar 19;11(3):e1005046. http://www.ncbi.nlm.nih.gov/pubmed/25790031
  • Reilman E, Mars RAT, van Dijl JM and Denham EL The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism – Nucleic Acid Research 2015;42(18):11393-407 http://www.ncbi.nlm.nih.gov/pubmed/25217586
  • Piersma S, Denham EL, Druhle S, Tonk RH, Schwikowski B, and van Dijl JM TLM-Quant: An Open-Source Pipeline for Visualization and Quantification of Gene Expression Heterogeneity in Growing Microbial Cells. 2013 PLoS One 17;8(7):e68696 http://www.ncbi.nlm.nih.gov/pubmed/23874729
  • Tsompanidou E, Denham EL, and van Dijl JM The Phenol Soluble Modulins – the hell hounds amongst the pandemonium of staphylococcal virulence factors. 2013 Trends in Microbiology 21(7);313-5 http://www.ncbi.nlm.nih.gov/pubmed/23684152
  • Tsompanidou E, Denham EL, Buist G, van Dijl JM, Back JW and Dreisbach A Distinct roles of phenol-soluble modulins in spreading of Staphylococcus aureus on wet surfaces. 2012 Applied and Environmental Microbiology 79;(3)886-95 http://www.ncbi.nlm.nih.gov/pubmed/23183971
  • Zweers JC, Nicolas P, Wiegert T, van Dijl JM and Denham EL Redefinition of the σW regulon of Bacillus subtilis. 2012 PLoS One 7(11):e48471 http://www.ncbi.nlm.nih.gov/pubmed/23155385
  • Tsompanidou E, Denham EL*, Sibbald MJJB, Buist G and van Dijl JM The role of sortase in colony spreading of Staphylococcus aureus. 2012 PLoS One 7(9):e44646 2012 * shared first authorship http://www.ncbi.nlm.nih.gov/pubmed/22970276
  • Goosens VJ, Mars RAT, Akeroyd M, Vente A, Dreisbach A, Denham EL, Kouwen TR, van Rij T, Olsthoorn M and van Dijl JM Is Proteomics a Reliable Tool to Probe the Oxidative Folding of Bacterial Membrane Proteins? 2012 Antioxidants and Redox Signalling 1;18(10):1159-64 http://www.ncbi.nlm.nih.gov/pubmed/22540663
  • Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Aymerich S, Becher D, Botella E, Delumeau O, Doherty G, Denham EL, Devine K, Fogg M, Fromion V, Goelzer A, Hoebeke M, Jarmer H, Jules M, Klipp E, Nannapaneni P, Le Chat L, Lecointe F, Lewis P, Liebermeister W, Harwood CR, Homuth G, Mars RAT, Pohl S, Rinn B, Rugheimer F, Sappa PK, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P and Noirot P. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. 2012 Science 2;335(6072):1103-6 http://www.ncbi.nlm.nih.gov/pubmed/22383849
  • Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S and Sauer U. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. 2012 Science 2;335(6072):1099-103 http://www.ncbi.nlm.nih.gov/pubmed/22383848
  • van der Ploeg R, Mäder U, Homuth G, Schaffer M, Denham EL, Monteferrante CG, Miethke M, Marahiel MA, Harwood CR, Winter T, Hecker M, Antelmann H and van Dijl JM Environmental salinity determines the specificity and need for Tat-dependent secretion of the YwbN protein in Bacillus subtilis. 2011 PLoS One 30;6(3):e18140 http://www.ncbi.nlm.nih.gov/pubmed/21479178
  • Tsompanidou E, Sibbald MJJB, Chlebowicz MA, Buist G, van Dijl JM and Denham EL Requirement of the agr locus for colony spreading of Staphylococcus aureus. 2011 Journal of Bacteriology 193(5):1267-72 http://www.ncbi.nlm.nih.gov/pubmed/21169484
  • Botella E, Fogg M, Jules M, Piersma S, Doherty G, Hansen A, Denham EL, Le Chat L, Veiga P, Bailey K, Lewis PJ, van Dijl JM, Aymerich S, Wilkinson AJ, Devine KM. pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis. 2010 Microbiology 156(pt6):1600-8 http://www.ncbi.nlm.nih.gov/pubmed/20150235
  • Kouwen TR, Nielsen AK, Denham EL, Dubois JY, Dorenbos R, Rasmussen MD, Quax WJ, Freudl R, van Dijl JM. Contributions of the pre- and pro-regions of a Staphylococcus hyicus lipase to secretion of a heterologous protein by Bacillus subtilis. 2010 Applied and Environmental Microbiology 76(3):659-69 http://www.ncbi.nlm.nih.gov/pubmed/19948853
  • Kouwen TR, Trip EN, Denham EL, Sibbald MJ, Dubois JY, van Dijl JM. The large mechanosensitive channel MscL determines bacterial susceptibility to the bacteriocin sublancin 168. 2009 Antimicrobial Agents and Chemotherapy 53(11):4702-11 http://www.ncbi.nlm.nih.gov/pubmed/19738010
  • Kouwen TR, Antelmann H, van der Ploeg R, Denham EL, Hecker M, van Dijl JM. MscL of Bacillus subtilis prevents selective release of cytoplasmic proteins in a hypotonic environment. 2009 Proteomics 9(4):1033-43 http://www.ncbi.nlm.nih.gov/pubmed/19160392
  • Denham EL, Ward PN, Leigh JA. In the absence of Lgt, lipoproteins are shed from Streptococcus uberis independently of Lsp. 2009 Microbiology 155(Pt 1):134-41 http://www.ncbi.nlm.nih.gov/pubmed/19118354
  • Denham EL, Ward PN, Leigh JA. Lipoprotein signal peptides are processed by Lsp and Eep of Streptococcus uberis. 2008 Journal of Bacteriology 190(13):4641-7 http://www.ncbi.nlm.nih.gov/pubmed/18469106