import analysers.AnalysisPlugin;
import ij.IJ;
import java.awt.Color;
import java.awt.geom.Ellipse2D;
import util.Cell;

/**
 * Highlights dividing cells using a circle of randomly selected colour.
 * 
 * @version 01-Mar-2011
 * @author mike
 */
public class HighlightDivisions extends AnalysisPlugin{

    private int dividings=0;

    @Override
    public void analyze(Cell clickedCell) {
        dividings = 0;
//        TrackedCell.clearTrackingFlag(cells);
//        IJ.log("list of "+cells.size());
        for(Cell c: cells){
            highlightCell(c);
        }
        IJ.log("Highlighted "+dividings+" divisions");
    }

    @Override
    public void setup() {
        IJ.showMessage("Highlights cells which divide");
    }

    @Override
    public void cellClicked(Cell currentCell) {        
        do{
//            currentCell.setBeingTracked(true);
            highlightCell(currentCell);
            currentCell = currentCell.getNextCell();
        }while(currentCell!=null);
    }

    private void highlightCell(Cell currentCell) {
        Cell d = currentCell.getDaughterCell();
        if (d != null) {
            IJ.log("Frame: " + currentCell.getFrame()+" x:"+currentCell.getX()+" y:"+currentCell.getY());
            dividings++;
            Color col = new Color((float) Math.random(), (float) Math.random(), (float) Math.random());
            screen.addToFrame(currentCell.getFrame(), new Ellipse2D.Float((int) currentCell.getX() - 5, (int) currentCell.getY() - 5, 10, 10), col, 5);
        }
    }

    @Override
    public String getName() {
        return "Highlight Dividing Cells";
    }

}