Our paper "Spheroidal Molecular Communication via Diffusion: Signaling Between Homogeneous Cell Aggregates" (arXiv link) has been accepted to appear in IEEE Transactions on Molecular, Biological, and Multi-Scale Communications. We model two spheroids as transmitter and receiver in a diffusion-based molecular communication system. Both spheroids are modeled as spheres whose porous features are approximated with a lower diffusion coefficient than that of the surrounding fluid medium. We derive the end-to-end channel impulse response and characterize the corresponding communications performance.

This paper is an output of the SIMBA project and is the first journal paper of Mitra Rezaei's PhD. It was also co-authored with Hamidreza Arjmandi from our group, in addition to Mohamad Zoofaghari (Yazd University, Iran) and our SIMBA project collaborators at AstraZeneca Sweden (Kajsa Kanebratt, Liisa Vilen, David Janzen, and Peter Gennemark).

Our paper "Spheroidal Molecular Communication via Diffusion: Signaling Between Homogeneous Cell Aggregates" has been posted to arXiv. We model two spheroids as transmitter and receiver in a diffusion-based molecular communication system. Both spheroids are modeled as spheres whose porous features are approximated with a lower diffusion coefficient than that of the surrounding fluid medium. We derive the end-to-end channel impulse response and characterize the corresponding communications performance.

This paper is an output of the SIMBA project. It was co-authored with Mitra Rezaei and Hamidreza Arjmandi from our group, in addition to Mohamad Zoofaghari (Yazd University, Iran) and our SIMBA project collaborators at AstraZeneca Sweden (Kajsa Kanebratt, Liisa Vilen, David Janzen, and Peter Gennemark).

We contributed to the online educational resource Best Readings in Molecular Communication, which has been issued by the IEEE Communications Society. It is a reading list of notable textbooks, special issues, and a selection of the most significant research papers in the field of molecular communication. Most of the listed resources are from within the last 10 years. The list was compiled to help newcomers to the field - both from within and outside the communications engineering community - become quickly familiar with the fundamentals and major advancements of molecular communication.

This resource was co-authored with Dadi Bi and Yansha Deng (King's College London) and Nan Yang (Australian National University).

Our paper "DeepGEEP: Data-Driven Prediction of Bacterial Biofilm Gene Expression Profiles" has been posted to bioRxiv. This paper considers petri dish experiments where a signaling molecule that can stimulate fluorescence is added to a freshly-plated bacteria sample. The fluorescence is triggered by gene expression and requires that the local signaling molecule concentration is within a suitable range. We try to predict where fluorescence will occur based on the location where the signaling molecules are dropped onto the dish. A convolutional neural network is applied to simulated data to make the predictions.

This paper is an output of the SIMBA project. It is first-authored by our group member Hamidreza Arjmandi and co-authored with Christophe Corre (University of Warwick School of Life Sciences and Department of Chemistry) and Hamidreza Jahangir.

Four contributions from our research group were presented at ACM NanoCom 2023 which we also had the great pleasure of hosting here at Warwick! Thanks to an agreement between ACM and the University of Warwick, all four are freely available with Open Access from the ACM Digital Library.

The regular paper Biophysical Model for Signal-Embedded Droplet Soaking into 2D Cell Culture presents our group's first experimental work with bacteria where we develop a model for liquid droplets soaking into an agar plate. We derive a channel response to describe the molecule dynamics within the agar and the molecules that get absorbed by bacteria growing on top of the agar. We use a basic experiment to estimate the droplet soaking parameters and use particle simulations for the diffusion and absorption processes. The paper was co-authored with Christophe Corre (University of Warwick School of Life Sciences and Department of Chemistry).

Furthermore, we presented 3 poster papers:

1. Role of Channel Capacity in Biofilm introduces the usefulness of the notion of communication channel capacity in biofilms. Yanahan Paramalingam was the first author.
2. Generalized Model of Neurite Trafficking presents a Markov chain model for molecules being transported inside vesicles along the axon of a neuron. This paper was co-authored with Anne Straube (Warwick Medical School). Mahir Taher was the first author.
3. On the Order Statistics of Chemical Kinetics and Their Role in Molecular Communication presents our first work to model the timing of chemical reaction events.

We've made our group's first pre-print submission to bioRxiv. We posted our paper 3D Cell Cultures Amplify Diffusion Signals. This paper models the amplification of diffusion signals that occurs across the boundary of an organoid immersed in liquid. With a combination of theory and experiments, we verify the amplification factor as a function of diffusion coefficients inside and outside the organoid. The main result is that, on a very short timescale, organoids act like sponges and can make measurable changes to nutrient concentrations in the surrounding environment. This provides useful insight for lab-on-chip systems and other applications that have dense collections of cells.

This paper is an output of the SIMBA project. It is first-authored by our group member Hamidreza Arjmandi and co-authored with our SIMBA project collaborators at AstraZeneca Sweden (Kajsa Kanebratt, Liisa Vilen, and Peter Gennemark).

Our paper "Biophysical Model for Signal-Embedded Droplet Soaking into 2D Cell Culture" has been posted to arXiv. This paper presents our group's first experimental work with bacteria where we develop a model for liquid droplets soaking into an agar plate. We derive a channel response to describe the molecule dynamics within the agar and the molecules that get absorbed by bacteria growing on top of the agar. We use a basic experiment to estimate the droplet soaking parameters and use particle simulations for the diffusion and absorption processes. This work will be the foundation for us understanding how signals can propagate within and between surface bacterial communities. The paper was co-authored with Christophe Corre (University of Warwick School of Life Sciences and Department of Chemistry).

Our paper "Diffusive Molecular Communication with a Spheroidal Receiver for Organ-on-Chip Systems" was accepted for presentation at IEEE ICC this May in Rome, Italy. This paper will be our group's first publication focused on organ-on-chip systems. We model an organoid of cells as a receiver and derive the channel response from a nearby point transmitter. We approximate the porous organoid receiver as a sphere with a lower diffusion coefficient and show its impact on the received signal. This paper was co-authored with Hamidreza Arjmandi and Mitra Rezaei from our group, in addition to Mohamad Zoofaghari (Yazd University, Iran) and our SIMBA project collaborators at AstraZeneca Sweden (Kajsa Kanebratt, Liisa Vilen, David Janzen, and Peter Gennemark).

We're pleased to announce that we will be hosting the 10th ACM International Conference on Nanoscale Computing and Communication (ACM NanoCom) here at the University of Warwick. The conference will be held from 20-22 September, 2023. Adam Noel is serving as General Chair along with Andrew Eckford (York University, Canada). Other local organisers include Hamidreza Arjmandi as Local Organization Chair, Matthew Higgins as Sponsorship Chair, and Yanahan Paramalingam as Social Media Chair.

ACM NanoCom 2023 is endorsed by the Technical Committee on Molecular, Biological, and Multi-Scale Communications of the IEEE Communications Society.

The Call for Papers is now available. Full details can be found here. The initial deadline for Regular Papers is 9 April 2023.