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Journals


  • Pereira, Rui P. A., Peplies, Jörg, Jörg, Douglas, Brettar, Ingrid, Höfle, Manfred G.. 2018. Pseudomonas-specific NGS assay provides insight into abundance and dynamics of Pseudomonas species including P. aeruginosa in a cooling tower. Frontiers in Microbiology, 9, View
  • Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid, Höfle, Manfred G.. 2017. Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1), View
  • Vezzulli, L., Grande, C., Tassistro, G., Brettar, I., Höfle, M. G., Pereira, Rui P. A., Mushi, D., Pallavicini, A., Vassallo, P., Pruzzo, C.. 2017. Whole-genome enrichment provides deep insights into vibrio cholerae metagenome from an African river. Microbial Ecology, 73 (3), pp. 734-738, View
  • Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid, Höfle, Manfred G.. 2017. Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1), View
  • Pereira, Rui P. A., Peplies, Jörg, Höfle, Manfred G., Brettar, Ingrid. 2017. Bacterial community dynamics in a cooling tower with emphasis on pathogenic bacteria and Legionella s pecies using universal and genus-specific deep sequencing. Water Research, 122, pp. 363-376, View
  • Guerra-Assunç ão, J. A., Crampin, A. C., Houben, R. M. G. J., Mzembe, T., Mallard, K., Coll, F., Khan, P., Banda, L., Chiwaya, A., Pereira, Rui P. A., McNerney, R., Fine, P. E. M., Parkhill, J., Clark, T. G., Glynn, J. R.. 2015. Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. eLife, 4, View
  • Guerra-Assunç ão, José Afonso, Houben, Rein M. G. J., Crampin, Amelia C., Mzembe, Themba, Mallard, Kim, Coll, Francesc, Khan, Palwasha, Banda, Louis, Chiwaya, Arthur, Pereira, Rui P. A., McNerney, Ruth, Harris, David, Parkhill, Julian, Clark, Taane G., Glynn, Judith R.. 2014. Recurrence due to relapse or reinfection with Mycobacterium tuberculosis : a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up. Journal of Infectious Diseases, 211 (7), pp. 1154-1163, View
  • Pereira, Rui P. A., Cole, M. J., Ison, C. A.. 2013. Combination therapy for gonorrhoea : in vitro synergy testing. Journal of Antimicrobial Chemotherapy, 68 (3), pp. 640-643, View
  • Florindo, C., Pereira, Rui P. A., Boura, M., Nunes, B., Paulino, A., Gomes, J. P., Borrego, M. J.. 2010. Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009). Sexually Transmitted Infections, 86 (6), pp. 449-453, View




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