# Enable Numerous Variables In Significance Analysis of Gene Expression

## Documentation for package ‘Envisage’ version 1.0-2

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

alias.glmNA | Find Aliases (Dependencies) in a Model
class:glmNA | Class for Envisage Analysis
coef.glmNA | Extract Model Coefficients
corParams | Flag highly correlated parameters
dataTransform | Gene expression data formatting for Envisage
envisage | Enables Numerous Variables In Significant Analysis of Gene Expression
GS2BC | Convertor for GeneSpring GSint and Bioconductor ExpressionSet objects
INTlevels | Calculate the total number of levels within a model for package Envisage
labelParams | Remove labelling variables
modelCalcINT | Fit a model with main effect and first order interaction terms for each gene and calculate significance
modelCalcME | Fit a model with main effect terms only for each gene and calculate significance
modelEntry | Specify a minimum model for step-wise model fitting
mulTestCor | Multiple testing corrections for package Envisage
result.output | Output significant genes for package Envisage
SkinvsPancreas | Comparison of Gene Expression in Skin and Pancreas