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Proteomics RTP

Publications

Proteomics RTP Publications

The high-quality and collaborative nature of the analyses carried out by the Proteomics RTP have added significant academic value to research projects resulting in numerous peer-reviewed publications:

2024

(1) Barker, Eleanor, Amy E. Milburn, Nordine Helassa, Dean E. Hammond, Natalia Sanchez-Soriano, Alan Morgan, and Jeff W. Barclay. ‘Proximity Labelling Reveals Effects of Disease-Causing Mutation on the DNAJC5/Cysteine String Protein ? Interactome’. Biochemical Journal 481, no. 3 (29 January 2024): 141–60. https://doi.org/10.1042/BCJ20230319.

(2) Gaetani, Miss Lucia, Isabel Campos Pinto, Meng Li, Peter O’Connor, Susan Giorgi-Coll, Matthew Tyreman, Katherine L. Rumary, James A. Schouten, Paul Davis, and Ann M. Dixon. ‘Towards Detection of Structurally-Diverse Glycated Epitopes in Native Proteins: Single-Chain Antibody Directed to Non-A1c Epitope in Human Haemoglobin’. Molecular Immunology 166 (4 January 2024): 16–28. https://doi.org/10.1016/j.molimm.2023.12.008.

2023

(1) Barnett, Sarah E., Jenna Kenyani, Martina Tripari, Zohra Butt, Rudi Grosman, Francesca Querques, Liam Shaw, et al. ‘BAP1 Loss Is Associated with Higher ASS1 Expression in Epithelioid Mesothelioma: Implications for Therapeutic Stratification’. Molecular Cancer Research 21, no. 5 (1 May 2023): 411–27. https://doi.org/10.1158/1541-7786.MCR-22-0635.

(2) Cai, Weigang, Michaela Egertová, Cleidiane G. Zampronio, Alexandra M. Jones, and Maurice R. Elphick. ‘Molecular Identification and Cellular Localization of a Corticotropin-Releasing Hormone-Type Neuropeptide in an Echinoderm’. Neuroendocrinology 113, no. 2 (14 February 2023): 231–50. https://doi.org/10.1159/000517087.

(3) Carlsson, Emil, Umar Sharif, Wasu Supharattanasitthi, and Luminita Paraoan. ‘Analysis of Wild Type and Variant B Cystatin C Interactome in Retinal Pigment Epithelium Cells Reveals Variant B Interacting Mitochondrial Proteins’. Cells 12, no. 5 (January 2023): 713. https://doi.org/10.3390/cells12050713.

(4) Cheng, Jeffrey K. J., Tanja ?apa, Ivan Y. L. Chan, Thomas O. MacCreath, Ross Slater, and Meera Unnikrishnan. ‘Regulatory Role of Anti-Sigma Factor RsbW in Clostridioides Difficile Stress Response, Persistence, and Infection’. Journal of Bacteriology 205, no. 5 (26 April 2023): e00466-22. https://doi.org/10.1128/jb.00466-22.

(5) Manoharan, Shathviga, Grace Taylor-Joyce, Thomas A. Brooker, Carmen Sara Hernández Rodríguez, Alexia Hapeshi, Victoria Baldwin, Les Baillie, Petra C. F. Oyston, and Nicholas R. Waterfield. ‘From Cereus to Anthrax and Back Again: Assessment of the Temperature-Dependent Phenotypic Switching in the “Cross-over” Strain Bacillus Cereus G9241’. Frontiers in Microbiology 14 (2023). https://www.frontiersin.org/articles/10.3389/fmicb.2023.1113562.

(6) Masania, Jinit, Patrick Wijten, Susanne Keipert, Mario Ost, Susanne Klaus, Naila Rabbani, and Paul J. Thornalley. ‘Decreased Methylglyoxal-Mediated Protein Glycation in the Healthy Aging Mouse Model of Ectopic Expression of UCP1 in Skeletal Muscle’. Redox Biology 59 (February 2023): 102574. https://doi.org/10.1016/j.redox.2022.102574.

(7) Sheikh, Arsheed H., Iosif Zacharia, Alonso J. Pardal, Ana Dominguez-Ferreras, Daniela J. Sueldo, Jung-Gun Kim, Alexi Balmuth, et al. ‘Dynamic Changes of the Prf/Pto Tomato Resistance Complex Following Effector Recognition’. Nature Communications 14, no. 1 (4 May 2023): 2568. https://doi.org/10.1038/s41467-023-38103-6.

(8) Smith, Victoria, Giridhar Chandrasekharan, Kate E. Watkins, Ramon Garcia Marset, Jeannifer Yap, Sebastien Perrier, Arnaud Kengmo Tchoupa, and Meera Unnikrishnan. ‘The Staphylococcal Type VII Secretion System Impacts Daptomycin Sensitivity through Controlling Bacterial Cell Envelope Integrity’. bioRxiv, 20 November 2023. https://doi.org/10.1101/2023.11.20.567842.

(9) Taylor-Joyce, Grace, Shathviga Manoharan, Thomas A. Brooker, Carmen Sara Hernández-Rodríguez, Les Baillie, Petra C. F. Oyston, Alexia Hapeshi, and Nicholas R. Waterfield. ‘The Influence of Extrachromosomal Elements in the Anthrax “Cross-over” Strain Bacillus Cereus G9241’. Frontiers in Microbiology 14 (2023). https://www.frontiersin.org/articles/10.3389/fmicb.2023.1113642.

(10) Westermann, Linda M., Ian D. E. A. Lidbury, Chun-Yang Li, Ning Wang, Andrew R. J. Murphy, Maria del Mar Aguilo Ferretjans, Mussa Quareshy, et al. ‘Bacterial Catabolism of Membrane Phospholipids Links Marine Biogeochemical Cycles’. Science Advances 9, no. 17 (26 April 2023): eadf5122. https://doi.org/10.1126/sciadv.adf5122.

(11) Zeeshan, Mohammad, Edward Rea, Steven Abel, Kruno Vukuši?, Robert Markus, Declan Brady, Antonius Eze, et al. ‘Plasmodium ARK2-EB1 Axis Drives the Unconventional Spindle Dynamics, Scaffold Formation and Chromosome Segregation of Sexual Transmission Stages’. bioRxiv, 31 January 2023. https://doi.org/10.1101/2023.01.29.526106.

2022

(1) Murphy, A. R. J. et al. 2-Aminoethylphosphonate utilization in Pseudomonas putida BIRD-1 is controlled by multiple master regulators. Environmental Microbiology 24, 1902–1917 (2022).

(2) Zhang, L.-M. et al. Biochemical mechanism of phosphorus limitation impairing nitrogen fixation in diazotrophic bacterium Klebsiella variicola W12. Journal of Sustainable Agriculture and Environment 1, 108–117 (2022).

(3) Vu, T. et al. Synthesis and Identification of Biologically Active Mono-Labelled FITC-Insulin Conjugate. J Fluoresc (2022) doi:10.1007/s10895-021-02867-1.

(4) Malki, I. et al. Cdk1-mediated threonine phosphorylation of Sam68 modulates its RNA binding, alternative splicing activity, and cellular functions. 2022.03.23.485498 Preprint at https://doi.org/10.1101/2022.03.23.485498 (2022).

(5) Scanlan, J. et al. The Proteobacterial Methanotroph Methylosinus trichosporium OB3b Remodels Membrane Lipids in Response to Phosphate Limitation. mBio 13, e00247-22 (2022).

(6) Rahman, A. et al. GMAP is an Atg8a-interacting protein that regulates Golgi turnover in Drosophila. Cell Reports 39, 110903 (2022).

(7) Manoharan, S. et al. From cereus to anthrax and back again: The role of the PlcR regulator in the “cross-over” strain Bacillus cereus G9241. 2022.07.06.498675 Preprint at https://doi.org/10.1101/2022.07.06.498675 (2022).

(8) Lidbury, I. D. E. A. et al. Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions. mSystems 0, e00025-22 (2022).

(9) Zadjelovic, V. et al. A mechanistic understanding of polyethylene biodegradation by the marine bacterium Alcanivorax. Journal of Hazardous Materials 436, 129278 (2022).

(10) Cheng, J. K. J. et al. The regulatory role of anti-sigma factor, RsbW, in Clostridioides difficile stress response, persistence and infection. 2022.08.22.504775 Preprint at https://doi.org/10.1101/2022.08.22.504775 (2022).

(11) Escudero Castelán, N. et al. Receptor deorphanization in an echinoderm reveals kisspeptin evolution and relationship with SALMFamide neuropeptides. BMC Biol 20, 187 (2022).

(12) Redkar, A. et al. Conserved secreted effectors contribute to endophytic growth and multihost plant compatibility in a vascular wilt fungus. The Plant Cell 34, 3214–3232 (2022).

(13) Pardal, A. J. & Bowman, A. J. A specific role for importin-5 and NASP in the import and nuclear hand-off of monomeric H3. eLife 11, e81755 (2022).

(14) Papoutsopoulou, S. et al. Nfkb2 deficiency and its impact on plasma cells and immunoglobulin expression in murine small intestinal mucosa. American Journal of Physiology-Gastrointestinal and Liver Physiology 323, G306–G317 (2022).

(15) Gohel, R. et al. Selective autophagy and Golgi quality control in Drosophila. Autophagy 18, 2508–2509 (2022).

(16) Liyanagedera, S. B. W. et al. SpyPhage: A Cell-Free TXTL Platform for Rapid Engineering of Targeted Phage Therapies. ACS Synth. Biol. 11, 3330–3342 (2022).

(17) Dwomoh, L. et al. M1 muscarinic receptor activation reduces the molecular pathology and slows the progression of prion-mediated neurodegenerative disease. Science Signaling 15, eabm3720 (2022).

(18) Liu, T. et al. Mechanochemical tuning of a kinesin motor essential for malaria parasite transmission. Nat Commun 13, 6988 (2022).

(19) Stirrup, R. et al. Aminolipids elicit functional trade-offs between competitiveness and bacteriophage attachment in Ruegeria pomeroyi. ISME J 1–11 (2022) doi:10.1038/s41396-022-01346-0.

(20) Zhang, Y. & Nezis, I. P. Label-free quantitative proteomic analysis of adult Drosophila heads. STAR Protocols 3, 101830 (2022).

2021

(1) Vu, T.; Taylor, M. J.; Singh, H.; Bilmoria, J.; Bottrill, A.; Sahota, T. Synthesis and Identification of Biologically Active Mono-Labelled FITC-Insulin Conjugate. J Fluoresc 2022. https://doi.org/10.1007/s10895-021-02867-1.

(2) Karlikowska, M.; Singh, A.; Bhatt, A.; Ott, S.; Bottrill, A. R.; Besra, G. S.; Fullam, E. Biochemical and Phenotypic Characterisation of the Mycobacterium Smegmatis Transporter UspABC. The Cell Surface 2021, 7, 100052. https://doi.org/10.1016/j.tcsw.2021.100052.

(3) Jones, R. A.; Shropshire, H.; Zhao, C.; Murphy, A.; Lidbury, I.; Wei, T.; Scanlan, D. J.; Chen, Y. Phosphorus Stress Induces the Synthesis of Novel Glycolipids in Pseudomonas Aeruginosa That Confer Protection against a Last-Resort Antibiotic. ISME J 2021, 15 (11), 3303–3314. https://doi.org/10.1038/s41396-021-01008-7.

(4) Pardal, A. J.; Bowman, A. J. Nuclear Import and Chaperoning of Monomeric Histones H3 and H4 Is Mediated by Imp5, NASP and the HAT1 Complex; bioRxiv, 2021; p 2021.10.19.464968. https://doi.org/10.1101/2021.10.19.464968.

(5) Linley, A. J.; Karydis, L. I.; Mondru, A. K.; D’Avola, A.; Shmrany, H. A.; Cicconi, S.; Griffin, R.; Forconi, F.; Pettitt, A. R.; Kalakonda, N.; Rawstron, A. C.; Hillmen, P.; Steele, A. J.; MacEwan, D. J.; Packham, G.; Prior, I. A.; Slupsky, J. R. Kinobead Profiling Reveals Reprogramming of BCR Signaling in Response to Therapy within Primary CLL Cells. Clin Cancer Res 2021, 27 (20), 5647–5659. https://doi.org/10.1158/1078-0432.CCR-21-0161.

(6) Rahman, A.; Lorincz, P.; Juhasz, G.; Zhang, Y.; Nezis, I. GMAP Is an Atg8a-Interacting Protein That Regulates Golgi Turnover In Drosophila; SSRN Scholarly Paper ID 3920639; Social Science Research Network: Rochester, NY, 2021. https://doi.org/10.2139/ssrn.3920639.

(7) Tinoco, A. B.; Barreiro-Iglesias, A.; Yañez Guerra, L. A.; Delroisse, J.; Zhang, Y.; Gunner, E. F.; Zampronio, C. G.; Jones, A. M.; Egertová, M.; Elphick, M. R. Ancient Role of Sulfakinin/Cholecystokinin-Type Signalling in Inhibitory Regulation of Feeding Processes Revealed in an Echinoderm. eLife 2021, 10, e65667. https://doi.org/10.7554/eLife.65667.

(8) Lidbury, I. D. E. A.; Raguideau, S.; Liu, S.; Murphy, A. R. J.; Stark, R.; Borsetto, C.; Fraser, T.; Goodall, A.; Bottrill, A.; Jones, A.; Bending, G. D.; Tibbet, M.; Hammond, J. P.; Quince, C.; Scanlan, D. J.; Pandhal, J.; Wellington, E. M. H. Meta-Exoproteomics Identifies Active Plant-Microbe Interactions Operating in the Rhizosphere; bioRxiv, 2021; p 2021.09.01.458574. https://doi.org/10.1101/2021.09.01.458574.

(9) Redkar, A.; Sabale, M.; Schudoma, C.; Zechmann, B.; Gupta, Y. K.; López-Berges, M. S.; Venturini, G.; Gimenez-Ibanez, S.; Turrà, D.; Solano, R.; Pietro, A. D. Conserved Secreted Effectors Determine Endophytic Growth and Multi-Host Plant Compatibility in a Vascular Wilt Fungus; bioRxiv, 2021; p 2021.08.29.457830. https://doi.org/10.1101/2021.08.29.457830.

(10) Hatano, T.; Palani, S.; Papatziamou, D.; Souza, D. P.; Salzer, R.; Tamarit, D.; Makwana, M.; Potter, A.; Haig, A.; Xu, W.; Townsend, D.; Rochester, D.; Bellini, D.; Hussain, H. M. A.; Ettema, T.; Löwe, J.; Baum, B.; Robinson, N. P.; Balasubramanian, M. Characterisation of the Ubiquitin-ESCRT Pathway in Asgard Archaea Sheds New Light on Origins of Membrane Trafficking in Eukaryotes; bioRxiv, 2021; p 2021.08.17.456605. https://doi.org/10.1101/2021.08.17.456605.

(11) Borsetto, C.; Raguideau, S.; Travis, E.; Kim, D.-W.; Lee, D.-H.; Bottrill, A.; Stark, R.; Song, L.; Cha, C.-J.; Pearson, J.; Quince, C.; Singer, A. C.; Wellington, E. M. H. Impact of Sulfamethoxazole on a Riverine Microbiome. Water Research 2021, 201, 117382. https://doi.org/10.1016/j.watres.2021.117382.

(12) Dwomoh, L.; Rossi, M.; Scarpa, M.; Khajehali, E.; Molloy, C.; Herzyk, P.; Mistry, S. N.; Bottrill, A. R.; Sexton, P. M.; Christopoulos, A.; Conn, P. J.; Lindsley, C. W.; Bradley, S. J.; Tobin, A. B. Activation of M1 Muscarinic Receptors Reduce Pathology and Slow Progression of Neurodegenerative Disease; bioRxiv, 2021; p 2021.07.30.454298. https://doi.org/10.1101/2021.07.30.454298.

(13) Murphy, A. R. J.; Scanlan, D. J.; Chen, Y.; Adams, N. B. P.; Cadman, W. A.; Bottrill, A.; Bending, G.; Hammond, J. P.; Hitchcock, A.; Wellington, E. M. H.; Lidbury, I. D. E. A. Transporter Characterisation Reveals Aminoethylphosphonate Mineralisation as a Key Step in the Marine Phosphorus Redox Cycle. Nat Commun 2021, 12 (1), 4554. https://doi.org/10.1038/s41467-021-24646-z.

(14) Rangama, S.; Lidbury, I. D. E. A.; Holden, J. M.; Borsetto, C.; Murphy, A. R. J.; Hawkey, P. M.; Wellington, E. M. H. Mechanisms Involved in the Active Secretion of CTX-M-15 β-Lactamase by Pathogenic Escherichia Coli ST131. Antimicrobial Agents and Chemotherapy 2021. https://doi.org/10.1128/AAC.00663-21.

(15) Larocque, G.; Moore, D. J.; Sittewelle, M.; Kuey, C.; Hetmanski, J. H. R.; La-Borde, P. J.; Wilson, B. J.; Clarke, N. I.; Caswell, P. T.; Royle, S. J. Intracellular Nanovesicles Mediate Α5β1 Integrin Trafficking during Cell Migration. Journal of Cell Biology 2021, 220 (10), e202009028. https://doi.org/10.1083/jcb.202009028.

(16) Querques, F.; Darling, S.; Cheetham-Wilkinson, I.; Kim, R. Q.; Hapangama, D. K.; Sixma, T. K.; Coulson, J. M. S18-Phosphorylation of USP7 Regulates Interaction with TCEAL4 That Defines Specific Complexes and Potentially Distinct Functions; bioRxiv, 2021; p 2021.07.07.451439. https://doi.org/10.1101/2021.07.07.451439.

(17) Vong, Y. H.; Sivashanmugam, L.; Leech, R.; Zaucker, A.; Jones, A.; Sampath, K. The RNA-Binding Protein Igf2bp3 Is Critical for Embryonic and Germline Development in Zebrafish. PLOS Genetics 2021, 17 (7), e1009667. https://doi.org/10.1371/journal.pgen.1009667.

(18) Wright, R. J.; Bosch, R.; Langille, M. G. I.; Gibson, M. I.; Christie-Oleza, J. A. A Multi-OMIC Characterisation of Biodegradation and Microbial Community Succession within the PET Plastisphere. Microbiome 2021, 9 (1), 141. https://doi.org/10.1186/s40168-021-01054-5.

(19) Durand, S.; Callan-Sidat, A.; McKeown, J.; Li, S.; Kostova, G.; Hernandez-Fernaud, J. R.; Alam, M. T.; Millard, A.; Allouche, D.; Constantinidou, C.; Condon, C.; Denham, E. L. Identification of an RNA Sponge That Controls the RoxS Riboregulator of Central Metabolism in Bacillus Subtilis. Nucleic Acids Research 2021, 49 (11), 6399–6419. https://doi.org/10.1093/nar/gkab444.

(20) Zeeshan, M.; Pandey, R.; Subudhi, A. K.; Ferguson, D. J. P.; Kaur, G.; Rashpa, R.; Nugmanova, R.; Brady, D.; Bottrill, A. R.; Vaughan, S.; Brochet, M.; Bollen, M.; Pain, A.; Holder, A. A.; Guttery, D. S.; Tewari, R. Protein Phosphatase 1 Regulates Atypical Mitotic and Meiotic Division in Plasmodium Sexual Stages. Commun Biol 2021, 4 (1), 1–14. https://doi.org/10.1038/s42003-021-02273-0.

(21) Daks, A.; Petukhov, A.; Fedorova, O.; Shuvalov, O.; Kizenko, A.; Tananykina, E.; Vasileva, E.; Semenov, O.; Bottrill, A.; Barlev, N. The RNA-Binding Protein HuR Is a Novel Target of Pirh2 E3 Ubiquitin Ligase. Cell Death Dis 2021, 12 (6), 1–14. https://doi.org/10.1038/s41419-021-03871-w.

(22) Cai, W.; Egertová, M.; Zampronio, C. G.; Jones, A. M.; Elphick, M. R. Molecular Identification and Cellular Localization of a Corticotropin-Releasing Hormone-Type Neuropeptide in an Echinoderm. NEN 2021. https://doi.org/10.1159/000517087.

(23) Aguilo-Ferretjans, M. del M.; Bosch, R.; Puxty, R. J.; Latva, M.; Zadjelovic, V.; Chhun, A.; Sousoni, D.; Polin, M.; Scanlan, D. J.; Christie-Oleza, J. A. Pili Allow Dominant Marine Cyanobacteria to Avoid Sinking and Evade Predation. Nat Commun 2021, 12 (1), 1857. https://doi.org/10.1038/s41467-021-22152-w.

(24) Helliwell, K. E.; Harrison, E. L.; Christie-Oleza, J. A.; Rees, A. P.; Kleiner, F. H.; Gaikwad, T.; Downe, J.; Aguilo-Ferretjans, M. M.; Al-Moosawi, L.; Brownlee, C.; Wheeler, G. L. A Novel Ca2+ Signaling Pathway Coordinates Environmental Phosphorus Sensing and Nitrogen Metabolism in Marine Diatoms. Current Biology 2021, 31 (5), 978-989.e4. https://doi.org/10.1016/j.cub.2020.11.073.

(25) Jacomin, A.-C.; Gohel, R.; Hussain, Z.; Varga, A.; Maruzs, T.; Eddison, M.; Sica, M.; Jain, A.; Moffat, K. G.; Johansen, T.; Jenny, A.; Juhasz, G.; Nezis, I. P. Degradation of Arouser by Endosomal Microautophagy Is Essential for Adaptation to Starvation in Drosophila. Life Science Alliance 2021, 4 (2). https://doi.org/10.26508/lsa.202000965.

(26) Durr, J.; Reyt, G.; Spaepen, S.; Hilton, S.; Meehan, C.; Qi, W.; Kamiya, T.; Flis, P.; Dickinson, H. G.; Feher, A.; Shivshankar, U.; Pavagadhi, S.; Swarup, S.; Salt, D.; Bending, G. D.; Gutierrez-Marcos, J. A Novel Signaling Pathway Required for Arabidopsis Endodermal Root Organization Shapes the Rhizosphere Microbiome. Plant and Cell Physiology 2021, 62 (2), 248–261. https://doi.org/10.1093/pcp/pcaa170.

(27) Furze, C. M.; Delso, I.; Casal, E.; Guy, C. S.; Seddon, C.; Brown, C. M.; Parker, H. L.; Radhakrishnan, A.; Pacheco-Gomez, R.; Stansfeld, P. J.; Angulo, J.; Cameron, A. D.; Fullam, E. Structural Basis of Trehalose Recognition by the Mycobacterial LpqY-SugABC Transporter. Journal of Biological Chemistry 2021, 296, 100307. https://doi.org/10.1016/j.jbc.2021.100307.

(28) Lee, Y.-S.; Maple, R.; Dürr, J.; Dawson, A.; Tamim, S.; del Genio, C.; Papareddy, R.; Luo, A.; Lamb, J. C.; Amantia, S.; Sylvester, A. W.; Birchler, J. A.; Meyers, B. C.; Nodine, M. D.; Rouster, J.; Gutierrez-Marcos, J. A Transposon Surveillance Mechanism That Safeguards Plant Male Fertility during Stress. Nat. Plants 2021, 7 (1), 34–41. https://doi.org/10.1038/s41477-020-00818-5.

(29) Shropshire, H.; Jones, R. A.; Aguilo-Ferretjans, M. M.; Scanlan, D. J.; Chen, Y. Proteomics Insights into the Burkholderia Cenocepacia Phosphorus Stress Response. Environmental Microbiology 2021, 23 (9), 5069–5086. https://doi.org/10.1111/1462-2920.15451.

(30) L. Bailey, T.; Ramon Hernandez-Fernaud, J.; I. Gibson, M. Proline Pre-Conditioning of Cell Monolayers Increases Post-Thaw Recovery and Viability by Distinct Mechanisms to Other Osmolytes. RSC Medicinal Chemistry 2021, 12 (6), 982–993. https://doi.org/10.1039/D1MD00078K.

(31) Alhujaily, M.; Abbas, H.; Xue, M.; de la Fuente, A.; Rabbani, N.; Thornalley, P. J. Studies of Glyoxalase 1-Linked Multidrug Resistance Reveal Glycolysis-Derived Reactive Metabolite, Methylglyoxal, Is a Common Contributor in Cancer Chemotherapy Targeting the Spliceosome. Frontiers in Oncology 2021, 11.

 

2020

(1) Linley, A. J.; Karydis, L. I.; Mondru, A.; D’Avola, A.; Cicconi, S.; Griffin, R.; Forconi, F.; Pettitt, A. R.; Kalakonda, N.; Rawstron, A.; Hillmen, P.; Steele, A. J.; MacEwan, D. J.; Packham, G.; Prior, I. A.; Slupsky, J. R. Kinobead Profiling Reveals Reprogramming of B-Cell Receptor Signaling in Response to Therapy Within Primary Chronic Lymphocytic Leukemia Cells. bioRxiv 2020, 841312, https://doi.org/10.1101/841312

(2) Jacomin, A.-C.; Petridi, S.; Di Monaco, M.; Bhujabal, Z.; Jain, A.; Mulakkal, N. C.; Palara, A.; Powell, E. L.; Chung, B.; Zampronio, C.; Jones, A.; Cameron, A.; Johansen, T.; Nezis, I. P. Regulation of Expression of Autophagy Genes by Atg8a-Interacting Partners Sequoia, YL-1, and Sir2 in Drosophila. Cell Reports 2020, 31 (8), 107695. https://doi.org/10.1016/j.celrep.2020.107695.

(3) Zeeshan, M.; Pandey, R.; Ferguson, D. J. P.; Tromer, E. C.; Markus, R.; Abel, S.; Brady, D.; Daniel, E.; Limenitakis, R.; Bottrill, A. R.; Le Roch, K. G.; Holder, A. A.; Waller, R. F.; Guttery, D. S.; Tewari, R. Real-Time Dynamics of Plasmodium NDC80 Reveals Unusual Modes of Chromosome Segregation during Parasite Proliferation. J. Cell. Sci. 2020. https://doi.org/10.1242/jcs.245753.

(4) Chhun, A.; Sousoni, D.; Aguiló-Ferretjans, M. del M.; Song, L.; Corre, C.; Christie-Oleza, J. A. Phytoplankton Trigger the Production of Cryptic Metabolites in the Marine Actinobacteria Salinispora Tropica. bioRxiv 2020, 2020.05.18.103358. https://doi.org/10.1101/2020.05.18.103358.

(5) Firczuk, H.; Teahan, J.; Mendes, P.; McCarthy, J. E. G. Multisite Rate Control Analysis Identifies Ribosomal Scanning as the Sole High-Capacity/Low-Flux-Control Step in MRNA Translation. FEBS J. 2020, 287 (5), 925–940. https://doi.org/10.1111/febs.15059.

(6) Pandey, R.; Abel, S.; Boucher, M.; Wall, R. J.; Zeeshan, M.; Rea, E.; Freville, A.; Lu, X. M.; Brady, D.; Daniel, E.; Stanway, R. R.; Wheatley, S.; Batugedara, G.; Hollin, T.; Bottrill, A. R.; Gupta, D.; Holder, A. A.; Le Roch, K. G.; Tewari, R. Plasmodium Condensin Core Subunits SMC2/SMC4 Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission. Cell Rep 2020, 30 (6), 1883-1897.e6. https://doi.org/10.1016/j.celrep.2020.01.033.

(7) Hatano, T.; Sivashanmugam, L.; Suchenko, A.; Hussain, H.; Balasubramanian, M. K. Pick-Ya Actin – a Method to Purify Actin Isoforms with Bespoke Key Post-Translational Modifications. J Cell Sci 2020, 133 (2). https://doi.org/10.1242/jcs.241406.

(8) L. Parker, H.; F. Tomás, R. M.; M. Furze, C.; S. Guy, C.; Fullam, E. Asymmetric Trehalose Analogues to Probe Disaccharide Processing Pathways in Mycobacteria. Organic & Biomolecular Chemistry 2020, 18 (18), 3607–3612. https://doi.org/10.1039/D0OB00253D.

2019

(9) Palani, S.; Köster, D. V.; Hatano, T.; Kamnev, A.; Kanamaru, T.; Brooker, H. R.; Hernandez-Fernaud, J. R.; Jones, A. M. E.; Millar, J. B. A.; Mulvihill, D. P.; Balasubramanian, M. K. Phosphoregulation of Tropomyosin Is Crucial for Actin Cable Turnover and Division Site Placement. J Cell Biol 2019, jcb.201809089. https://doi.org/10.1083/jcb.201809089.

(10) Fenn, J. S.; Nepravishta, R.; Guy, C. S.; Harrison, J.; Angulo, J.; Cameron, A. D.; Fullam, E. Structural Basis of Glycerophosphodiester Recognition by the Mycobacterium Tuberculosis Substrate-Binding Protein UgpB. ACS Chem. Biol. 2019, 14 (9), 1879–1887. https://doi.org/10.1021/acschembio.9b00204.

(11) Siddiqui, N.; Zwetsloot, A. J.; Bachmann, A.; Roth, D.; Hussain, H.; Brandt, J.; Kaverina, I.; Straube, A. PTPN21 and Hook3 Relieve KIF1C Autoinhibition and Activate Intracellular Transport. Nat Commun 2019, 10 (1), 1–16. https://doi.org/10.1038/s41467-019-10644-9.

(12) Pandey, R.; Abel, S.; Boucher, M.; Wall, R. J.; Zeeshan, M.; Rea, E.; Freville, A.; Lu, X. M.; Brady, D.; Daniel, E.; Stanway, R. R.; Wheatley, S.; Batugedara, G.; Hollin, T.; Bottrill, A. R.; Gupta, D.; Holder, A. A.; Roch, K. G. L.; Tewari, R. Plasmodium Condensin Core Subunits (SMC2/SMC4) Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission. bioRxiv 2019, 674028. https://doi.org/10.1101/674028.

(13) Guy, C. S.; Gibson, M. I.; Fullam, E. Targeting Extracellular Glycans: Tuning Multimeric Boronic Acids for Pathogen-Selective Killing of Mycobacterium Tuberculosis. Chem. Sci. 2019, 10 (23), 5935–5942. https://doi.org/10.1039/C9SC00415G.

(14) Jacomin, A.-C.; Petridi, S.; DiMonaco, M.; Jain, A.; Bhujabal, Z.; Mulakkal, N.; Palara, A.; Powell, E. L.; Chung, B.; Zampronio, C. G.; Jones, A.; Cameron, A.; Johansen, T.; Nezis, I. P. Atg8a Interacts with Transcription Factor Sequoia to Control the Expression of Autophagy Genes in Drosophila. bioRxiv 2019, 611731. https://doi.org/10.1101/611731.

(15) Tchoupa, A. K.; Jones, R. A.; Kuroki, A.; Alam, M. T.; Perrier, S.; Chen, Y.; Unnikrishnan, M. The Type VII Secretion System Protects Staphylococcus Aureus against Antimicrobial Host Fatty Acids. bioRxiv 2019, 572172. https://doi.org/10.1101/572172.

(16) Syed, J.; Palani, S.; Clarke, S. T.; Asad, Z.; Bottrill, A. R.; Jones, A. M. E.; Sampath, K.; Balasubramanian, M. K. Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-Lysine, Bicyclononyne-Lysine, and Diazirine-Lysine. International Journal of Molecular Sciences 2019, 20 (10), 2577. https://doi.org/10.3390/ijms20102577.

(17) Kröber, E.; Schäfer, H. Identification of Proteins and Genes Expressed by Methylophaga Thiooxydans During Growth on Dimethylsulfide and Their Presence in Other Members of the Genus. Front. Microbiol. 2019, 10. https://doi.org/10.3389/fmicb.2019.01132.

2018

(18) Siddiqui, N.; Bachmann, A.; Zwetsloot, A. J.; Hussain, H.; Roth, D.; Kaverina, I.; Straube, A. Activation of Intracellular Transport by Relieving KIF1C Autoinhibition. bioRxiv 2018, 488049. https://doi.org/10.1101/488049.

(19) Goodman, J. K.; Zampronio, C. G.; Jones, A. M. E.; Hernandez-Fernaud, J. R. Updates of the In-Gel Digestion Method for Protein Analysis by Mass Spectrometry. Proteomics 2018, 18 (23), e1800236. https://doi.org/10.1002/pmic.201800236.

(20) Apta-Smith, M. J.; Hernandez-Fernaud, J. R.; Bowman, A. J. Evidence for the Nuclear Import of Histones H3.1 and H4 as Monomers. EMBO J. 2018, 37 (19). https://doi.org/10.15252/embj.201798714.

(21) Pilkington, E. H.; Gustafsson, O. J. R.; Xing, Y.; Hernandez-Fernaud, J.; Zampronio, C.; Kakinen, A.; Faridi, A.; Ding, F.; Wilson, P.; Ke, P. C.; Davis, T. P. Profiling the Serum Protein Corona of Fibrillar Human Islet Amyloid Polypeptide. ACS Nano 2018, 12 (6), 6066–6078. https://doi.org/10.1021/acsnano.8b02346.

(22) Lin, M.; Egertová, M.; Zampronio, C. G.; Jones, A. M.; Elphick, M. R. Functional Characterization of a Second Pedal Peptide/Orcokinin-Type Neuropeptide Signaling System in the Starfish Asterias Rubens. J. Comp. Neurol. 2018, 526 (5), 858–876. https://doi.org/10.1002/cne.24371.

(23) Hatano, T.; Alioto, S.; Roscioli, E.; Palani, S.; Clarke, S. T.; Kamnev, A.; Hernandez-Fernaud, J. R.; Sivashanmugam, L.; Chapa-Y-Lazo, B.; Jones, A. M. E.; Robinson, R. C.; Sampath, K.; Mishima, M.; McAinsh, A. D.; Goode, B. L.; Balasubramanian, M. K. Rapid Production of Pure Recombinant Actin Isoforms in Pichia Pastoris. J. Cell. Sci. 2018, 131 (8). https://doi.org/10.1242/jcs.213827.

(24) Kaur, A.; Hernandez-Fernaud, J. R.; Aguilo-Ferretjans, M. D. M.; Wellington, E. M.; Christie-Oleza, J. A. 100 Days of Marine Synechococcus-Ruegeria Pomeroyi Interaction: A Detailed Analysis of the Exoproteome. Environ. Microbiol. 2018, 20 (2), 785–799. https://doi.org/10.1111/1462-2920.14012.

(25) Cai, W.; Kim, C.-H.; Go, H.-J.; Egertová, M.; Zampronio, C. G.; Jones, A. M.; Park, N. G.; Elphick, M. R. Biochemical, Anatomical, and Pharmacological Characterization of Calcitonin-Type Neuropeptides in Starfish: Discovery of an Ancient Role as Muscle Relaxants. Front Neurosci 2018, 12, 382. https://doi.org/10.3389/fnins.2018.00382.

2017

(26) Lin, M.; Egertová, M.; Zampronio, C. G.; Jones, A. M.; Elphick, M. R. Pedal Peptide/Orcokinin-Type Neuropeptide Signaling in a Deuterostome: The Anatomy and Pharmacology of Starfish Myorelaxant Peptide in Asterias Rubens. J. Comp. Neurol. 2017, 525 (18), 3890–3917. https://doi.org/10.1002/cne.24309.

(27) Tyrakis, P. A.; Yurkovich, M. E.; Sciacovelli, M.; Papachristou, E. K.; Bridges, H. R.; Gaude, E.; Schreiner, A.; D’Santos, C.; Hirst, J.; Hernandez-Fernaud, J.; Springett, R.; Griffiths, J. R.; Frezza, C. Fumarate Hydratase Loss Causes Combined Respiratory Chain Defects. Cell Rep 2017, 21 (4), 1036–1047. https://doi.org/10.1016/j.celrep.2017.09.092.

(28) Narvaez, A. J.; Ber, S.; Crooks, A.; Emery, A.; Hardwick, B.; Guarino Almeida, E.; Huggins, D. J.; Perera, D.; Roberts-Thomson, M.; Azzarelli, R.; Hood, F. E.; Prior, I. A.; Walker, D. W.; Boyce, R.; Boyle, R. G.; Barker, S. P.; Torrance, C. J.; McKenzie, G. J.; Venkitaraman, A. R. Modulating Protein-Protein Interactions of the Mitotic Polo-like Kinases to Target Mutant KRAS. Cell Chem Biol 2017, 24 (8), 1017-1028.e7. https://doi.org/10.1016/j.chembiol.2017.07.009.

(29) Christie-Oleza, J. A.; Sousoni, D.; Lloyd, M.; Armengaud, J.; Scanlan, D. J. Nutrient Recycling Facilitates Long-Term Stability of Marine Microbial Phototroph-Heterotroph Interactions. Nat Microbiol 2017, 2, 17100. https://doi.org/10.1038/nmicrobiol.2017.100.

(30) Lin, M.; Mita, M.; Egertová, M.; Zampronio, C. G.; Jones, A. M.; Elphick, M. R. Cellular Localization of Relaxin-like Gonad-Stimulating Peptide Expression in Asterias Rubens: New Insights into Neurohormonal Control of Spawning in Starfish. J. Comp. Neurol. 2017, 525 (7), 1599–1617. https://doi.org/10.1002/cne.24141.

(31) Lidbury, I. D. E. A.; Fraser, T.; Murphy, A. R. J.; Scanlan, D. J.; Bending, G. D.; Jones, A. M. E.; Moore, J. D.; Goodall, A.; Tibbett, M.; Hammond, J. P.; Wellington, E. M. H. The “known” Genetic Potential for Microbial Communities to Degrade Organic Phosphorus Is Reduced in Low-PH Soils. Microbiologyopen 2017, 6 (4). https://doi.org/10.1002/mbo3.474.

(32) Lidbury, I. D. E. A.; Murphy, A. R. J.; Fraser, T. D.; Bending, G. D.; Jones, A. M. E.; Moore, J. D.; Goodall, A.; Tibbett, M.; Hammond, J. P.; Scanlan, D. J.; Wellington, E. M. H. Identification of Extracellular Glycerophosphodiesterases in Pseudomonas and Their Role in Soil Organic Phosphorus Remineralisation. Sci Rep 2017, 7 (1), 2179. https://doi.org/10.1038/s41598-017-02327-6.

2016

(33) Üstün, S.; Sheikh, A.; Gimenez-Ibanez, S.; Jones, A.; Ntoukakis, V.; Börnke, F. The Proteasome Acts as a Hub for Plant Immunity and Is Targeted by Pseudomonas Type III Effectors. Plant Physiol. 2016, 172 (3), 1941–1958. https://doi.org/10.1104/pp.16.00808.

(34) Lidbury, I. D. E. A.; Murphy, A. R. J.; Scanlan, D. J.; Bending, G. D.; Jones, A. M. E.; Moore, J. D.; Goodall, A.; Hammond, J. P.; Wellington, E. M. H. Comparative Genomic, Proteomic and Exoproteomic Analyses of Three Pseudomonas Strains Reveals Novel Insights into the Phosphorus Scavenging Capabilities of Soil Bacteria. Environ. Microbiol. 2016, 18 (10), 3535–3549. https://doi.org/10.1111/1462-2920.13390.