Revealing Reactivity in Cancer-Associated Heme Proteins: Novel Time-Resolved Structural Approaches
Principal Supervisor: Dr Hanna Kwon
Secondary Supervisor(s): Dr Philip Ash
University of Registration: University of Leicester
BBSRC Research Themes: Understanding the Rules of Life (Structural Biology)
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Deadline: 23 May, 2024
Project Outline
Indoleamine 2,3-dioxygenase 1 (IDO1) is a heme-containing enzyme involved in the degradation of tryptophan to kynurenine. Cancer cells upregulate IDO1 to escape normal immune responses and, in many cases, a high expression of IDO1 is connected to poor prognosis. Understanding the precise mechanisms by which IDO1 modulates these processes is of paramount importance for therapeutic development and a deeper comprehension of immune homeostasis.
This project aims to investigate the catalytic mechanism and structural dynamics of IDO1 using cutting-edge structural and spectroscopic techniques, and computational analysis. Spectroscopy offers a powerful means to probe the intricate molecular events occurring during IDO1 catalysis in real-time. A combination of X-ray and time-resolved vibrational spectroscopic methods will be used to probe mechanistic details of IDO1. These methods will provide critical data on catalytic timescales that will feed directly into cutting-edge time-resolved structural studies.
The outcomes promise to extend our understanding of this crucial enzyme and its implications in health and disease, with potential far-reaching impacts in immunology and drug discovery.
A PhD student will gain a broad range of interdisciplinary skills in structural biology, chemical biology and biophysics in order to address an important question in cancer biology.
Techniques
- Molecular Biology (cloning & mutagenesis).
- Protein expression and purification (bacterial and mammalian).
- Enzyme kinetics.
- Protein crystallisation.
- Structure determination.
- X-ray Spectroscopy.
- Time-resolved spectroscopy (infrared, Raman).
- Synchrotron science.
- Chemical synthesis.