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Dr Sascha Ott - Recent Publications

UspABC

“Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC”, Magdalena Karlikowska, Albel Singh, Apoorva Bhatt, Sascha Ott, Andrew R Bottrill, Gurdyal S Besra, Elizabeth Fullam, The Cell Surface, accepted, 2021
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LHY nodulation Wordle

“The plant circadian clock gene LHY influences Medicago truncatula nodulation”, M. Achom, P. Roy, B. Lagunas, R. Bonyadi-Pour, A.J. Pardal, L. Baxter, B. Richmond, Aschauer, E. Fletcher, E. Picot, M. Rowson, J. Blackwell, C. Rich-Griffin, K.S. Mysore, J. Wen, S. Ott, I.A. Carré, M.L. Gifford, bioRxiv, 2021
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hPMC Wordle

"Characterization of highly proliferative decidual precursor cells during the window of implantation in human endometrium”, Maria Diniz-da-Costa, Chow-Seng Kong, Katherine J Fishwick, Thomas Rawlings, Paul J Brighton, Amelia Hawkes, Joshua Odendaal, Siobhan Quenby, Sascha Ott, Emma S Lucas, Pavle Vrljicak, Jan J Brosens, Stem Cells, accepted, 2021
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PIMS-TS

“The innate and adaptive immune landscape of SARS-CoV-2-associated Multisystem Inflammatory Syndrome in Children (MIS-C) from acute disease to recovery", Eleni Syrimi, Eanna Fennell, Alex Richter, Pavle Vrljicak, Richard Stark, Sascha Ott, Paul G Murray, Eslam Al-abadi, Ashish Chikermane, Pamela Dawson, Scott Hackett, Deepthi Jyothish, Hari Krishnan Kanthimathinathan, Sean Monaghan, Prasad Nagakumar, Barnaby R Scholefield, Steven Welch, Pamela Kearns, Graham Taylor, medRxiv, 2020
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Cell-type paper wordle

“Regulation of Cell Type-Specific Immunity Networks in Arabidopsis Roots”, Charlotte Rich-Griffin, Ruth Eichmann, Marco U Reitz, Sophie Hermann, Kate Woolley-Allen, Paul E Brown, Kate Wiwatdirekkul, Eddi Esteban, Asher Pasha, Karl-Heinz Kogel, Nicholas J Provart, Sascha Ott, Patrick Schäfer, Plant Cell, 32: 2742-2762, 2020
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eMSC Wordle

“Impact of sustained TGFβ receptor inhibition on chromatin accessibility and gene expression in cultured human endometrial MSC”, Raffaella Lucciola, Pavle Vrljicak, Shanti Gurung, Caitlin Filby, Saeedeh Darzi, Joanne Muter, Sascha Ott, Jan Brosens, Caroline E Gargett, Frontiers Cell and Developmental Biology, 8:567610, 2020
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Wordle depiction of paper contents

“Recurrent pregnancy loss is associated with a pro-senescent decidual response during the peri-implantation window”, Emma S Lucas, Pavle Vrljicak, Joanne Muter, Maria M Diniz-da-Costa, Paul J Brighton, Chow-Seng Kong, Julia Lipecki, Katherine J Fishwick, Joshua Odendaal, Lauren J Ewington, Siobhan Quenby, Sascha Ott, Jan J Brosens, Communications Biology, 3: 37, 2020
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Wordle depiction of paper contents

"Single-cell transcriptomics - a high-resolution avenue for plant functional genomics”, Charlotte Rich-Griffin, Annika Stechemesser, Jessica Finch, Emma Lucas, Sascha Ott, Patrick Schäfer, Trends in Plant Science, 25: 186-197, 2020
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Wordle depiction of paper contents

“Non-Coding Mutations in Urothelial Bladder Cancer: Biological and Clinical Relevance and Potential Utility as Biomarkers”, Ruhana R Jeeta, Naheema S Gordon, Laura Baxter, Anshita Goel, Boris Noyvert, Sascha Ott, Rebecca H Boucher, Nada Humayun-Zakaria, Roland Arnold, Nicholas D James, Maurice P Zeegers, KK Cheng, Richard T Bryan, Douglas G Ward, Bladder Cancer, 5: 263-272, 2019
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Wordle 23-gene panel

“Targeted deep sequencing of urothelial bladder cancers and associated urinary DNA: a 23-gene panel with utility for non-invasive diagnosis and risk stratification”, Douglas G Ward, Naheema S Gordon, Rebecca H Boucher, Sarah J Pirrie, Laura Baxter, Sascha Ott, Lee Silcock, Celina M Whalley, Joanne D Stockton, Andrew D Beggs, Mike Griffiths, Ben Abbotts, Hanieh Ijakipour, Fathimath N Latheef, Robert A Robinson, Andrew J White, Nicholas D James, Maurice P Zeegers, KK Cheng, Richard T Bryan, BJU International, 124: 532-544, 2019
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Nodulation

“Regulation of resource partitioning coordinates nitrogen and rhizobia responses and autoregulation of nodulation in the legume Medicago truncatula”, Beatriz Lagunas, Mingkee Achom, Roxanna Bonyadi-Pour, Alonso J Pardal, Bethany L Richmond, Chrysi Sergaki, Saúl Vázquez, Patrick Schäfer, Sascha Ott, John Hammond, Miriam L Gifford, Molecular Plant, 12: 833-846, 2019
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OPCs

“Discordant perturbations of transcriptome and epigenome landscapes highlight dual roles of proinflammatory players in a prenatal model of diffuse white matter injury”, Anne-Laure Schang, Juliette van Steenwinckel, Julia Lipecki, Charlotte Rich, Kate Woolley-Allen, Nigel Dyer, Tifenn Le Charpentier, Bobbi Fleiss, Patrick Schäfer, Sascha Ott, Valérie Mezger, Délara Sabéran-Djoneidi, Pierre Gressens, bioRxiv, 2018
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ABA paper

“Circadian control of abscisic acid biosynthesis and signalling pathways revealed by genome-wide analysis of LHY binding targets”, Sally Adams, Jack Grundy, Siren R Veflingstad, Nigel P Dyer, Matthew A Hannah, Sascha Ott, Isabelle A Carré, New Phytologist, 220: 893-907, 2018
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Commentary highlighting this article

tetramers

“Peptide–MHC Class I Tetramers Can Fail To Detect Relevant Functional T Cell Clonotypes and Underestimate Antigen-Reactive T Cell Populations”, Cristina Rius, Meriem Attaf, Katie Tungatt, Valentina Bianchi, Mateusz Legut, Amandine Bovay, Marco Donia, Per thor Straten, Mark Peakman, Inge Marie Svane, Sascha Ott, Tom Connor, Barbara Szomolay, Garry Dolton and Andrew K Sewell, The Journal of Immunology, 200: 2263-2279, 2018
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FASEB ATAC-seq

“Analysis of chromatin accessibility in decidualizing human endometrial stromal cells”, Pavle Vrljicak, Emma S Lucas, Lauren Lansdowne, Raffaella Lucciola, Joanne Muter, Nigel P Dyer, Jan J Brosens, Sascha Ott, The FASEB Journal, 32: 2467-2477, 2018
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CyVerse

“Bringing numerous methods for expression and promoter analysis to a public cloud computing service”, Krzysztof Polański, Bo Gao, Sam A Mason, Paul Brown, Sascha Ott, Katherine J Denby, David L Wild, Application Note in Bioinformatics, 34: 884–886, 2018
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Fusarium

“Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae", Andrew D Armitage, Andrew Taylor, Maria K Sobczyk, Laura Baxter, Bethany PJ Greenfield, Helen J Bates, Fiona Wilson, Alison C Jackson, Sascha Ott, Richard J Harrison, John P Clarkson, Scientific Reports, 8: 13530, 2018
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