April to June 2010
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Environment | Fossils | Genetics | Geology | Neuroscience | |||||
Physics | Plants | Psychology | Space |
Wednesday 2nd June 2010: A different kind of martian
Space travel has taken a long pause since the achievements of the Apollo missions of the late 60s and early 70s, but there is now a manned Mars mission underway - but with a huge twist. The fully trained astronauts are on a Mars space station, where they will live, work, sleep and have relaxation time for next year and a half. The catch? They're not leaving Earth.
The entire mission is a discovery of the limits of the mind. How will six qualified cosmonauts cope with the loneliness and confines of a few small rooms and the same faces for 520 days?
The simulation is taking place in a warehouse in Moscow, and echoes studies of loneliness that have previously been investigated in many a psychological Hollywood piece.
More information is available at the European Space Agency (ESA) project site: Mars500.
Friday 28th May 2010: New memory insights after 75 years!
A new study into the hippocampus - the brain's memory formation circuit, has revealed key insights to the function of a region that has remained largely elusive for over 75 years of Neuroscience research. The work undertaken allows scientists to consider a whole new route of electrical signalling in the hippocampus, further to the previously considered 'tri-synaptic pathway'.
Previous studies of the hippocampus have focussed on the following three synapses:
- the perforant path (cortex input to hippocampus) and dentate gyrus granule cells;
- the mossy fibres (dentate gyrus granule cell axons) - CA3 connections;
- the Schaffer collaterals (CA3 axons) - CA1 pyramidal cell inputs.
In each of these cases, in vitro slice preparations and in vivo recordings show an enhancement of activity following strong excitation protocols. This increase in activity at the synapses is known as long-term potentiation (LTP), which, along with the opposite, long-term depression (LTD), is thought to represent a function of learning and memory in the mammalian brain.
In this latest study by Chevaleyre and Siegelbaum, the CA2 region was shown to have little impact upon this tri-synaptic pathway, and underwent no LTP from any of these fibres. However, these cells did show LTP when their more distal inputs (from the cortex) were stimulated. Furthermore, they were also shown to have an inverse synaptic drive, with the proximal synapses having little input on the firing rate of the CA2 pyramidal neurons.
Also of crucial interest was the role that these cells play, since they appear not to be involved in the main circuit of memory formation. Previous studies had shown that the output of the hippocampus - the CA1 cells, were still capable of firing strongly, even when their main inputs (from CA3) were severed. Here, the team from the Howard Hughes Medical Institute proved that not only do CA2 cells form synapses with CA1 cells, but that they are also capable of driving them to fire, thus providing a separate moderation of hippocampal output from the usually considered circuitry.
Image taken from MRC Centre for Synaptic Plasticity. Paper reference: Chevaleyre & Siegelbaum, Neuron, 66, 560-572, 2010.
Friday 21st May 2010: It's life, but not as we know it...
Scientists from the J. Craig Venter Institute have created a form of fully synthetic life for the first time. Whilst previous work has seen the transferral of the genome of one bacteria into another, as well as the synthesis of a bacterial genome, this study has combined the two. Fully synthesised DNA has been inserted into a bacterium cell, resulting in an organism controlled solely by synthetic DNA.
Whilst some may not view the bacteria as entirely synthetic, due to the use of the host cell, the DNA was synthesised from single nucleotide bases, copying the code that had been sequenced from a natural bacteria. 1080 base pairs (bp) Blocks of DNA (including 80bp of overlap at each end) were then combined after insertion into yeast cells to give the bacterial chromosome.
The inserted, synthetic DNA took control of its host cell, controlling its functions including reproduction. The host cell (M. capricolum) was a different type to that of the DNA synthesised (M. mycoides) but the newly formed bacteria reproduced to give over a billion cells, each containing a copy of the synthesised DNA. This colony was confirmed to have all of the usual features of M. mycoides, rather than those of the original host cell.
Whilst the work is currently a long way from the sort of manipulations witnessed in science fiction, not to mention extremely expensive, with the project having run for over 10 years with 20 researchers and costing over $40 million, it does open the door to many possibilities for the future. It is hoped that similarly synthesised bacteria could one day be used to create vaccines or fuels. For a report on the ethics of this work, please see the BBC's report.
Images: Right - From Jurassic Park, Left - From article: Pennisi, E., Science, 328, 958-959, 2010.
Monday 17th May 2010: Pollutant Plants
Whilst many of the most significant drivers of climate change are thought to be of man's making, a recent publication in PNAS has shown that the success of one rapidly spreading vine is leading to a reduction in air quality.
The study focussed on the deep rooted vine, kudzu (Pueraria montana), and its spreading through south-eastern America (at up to 120,000 hectares per annum) after being introduced from Asia to prevent soil erosion on farmland in the early 20th Century.
The Nitrogen-fixing legume increases the soil's nitrogen content, allowing for a greater quantity of nitric oxide (NO) emissions, which in turn could raise ozone levels in the affected region. The sites in Georgia showed at least a 100% increase in NO emissions and up to 1000% increase in the rate of nitrogen mineralisation. Models of NO levels factoring in the spread of kudzu showed that the number of high levels of ozone events recorded could increase by up to 7 per summer, or more than double in areas where the vine is currently absent.
Thursday 13th May 2010: New old marine life - contradicting extinction
New fossil finds are changing scientists' percetions of extinction that occurred over 450 million years ago. The preserved fossils of marine creatures with soft bodies date back to 470-480 million years ago, to the start of the Ordovician period, long after they were thought to have become extinct, during the preceeding Cambrian period.
The Moroccan finds are highly similar to previous finds in America dating back a further 30-40 million years and, until now, assumed to have become extinct sometime soon after that. These latest fossils shed light upon marine life history, dating from a time during which there was great diversification of the animal species present on our planet.
The findings, reported in Nature, are of particular interest due to the soft-bodied nature of the subjects. Whilst many hard-bodied fossils date back from these periods, soft-bodied animals require a more precise set of conditions in which to form fossils. In this case, thick mud was laid down on the then ocean floor, trapping the bodies and preventing oxygen contact - thus providing a mineral environment in which the fossils could form.
The result of this find is that the previously theorised mass-extinction of marine life at the end of the Cambrian period now appears to simply be due to a lack of findings of this type. The team from Yale University intend to test this hypothesis further with future trips already planned for Morocco, taking in areas other than the Lower and Upper Fezouata Formations that yeilded the recent specimins.
Images from article: Van Roy et al., Nature, 465, 215-218, 2010.
Monday 10th May 2010: Viewing how we view inside
One of the biggest wonders in the natural world is that of the brain. How does it compute the vast quantities of data that it does? Over the past couple of centuries, Neuroscientists have begun to understand some of the means by which the brain can process information. However, there is still great debate as to how neurons deal with their inputs.
In an article recently published in Nature, a German team has studied the firing of neurons in the mouse primary visual cortex under different rotations and movements of the same visual stimulus - a grid of adjacent lines. The researchers found that, in line with previous studies of cats, various neurons within the mice fired at different orientations of the visual stimulus. Some of these were highly preferential, some less so.
More surprisingly, regardless of whether or not a neuron was highly tuned to a specific orientation (in terms of its overall output), it still receives hotspots of excitatory inputs in different locations under a variety of rotations of the visual stimulus. The same was even true of single dendrites - the branches of neuronal cells, which, without fail, received hotspots of activity in response to multiple orientation stimuli. Not only were adjacent inputs not the same, but looking at any one rotation associated response set showed a spread of locations across the entire neuron.
One of the most surprising aspects of this work was when comparing those neurons that fire in response to a specific rotation of the stimulus, and those that were less specific. Researchers found that both of these categories had the same sort of input sets, with highly active regions for each rotation, in spite of the fact that some resulted in the neuron firing more predominantly than others. This points to the computational aspect of neuronal cells, rather than simply adding up the inputs they receive.
Images from article: Jia et al., Nature, 464, 1307-1312, 2010.
Friday 7th May 2010: Rumbling on and on...
Since first erupting on the 14th April, Iceland's Eyjafjallajökull volcano has caused Europe to come to a standstill with the majority of airspace closed for six consecutive days in April. Fears are now growing of the potential for further ash plumes to spread across the continent, particularly if the larger nearby volcano, Katla, erupts in the near future.
Whilst the volcano has officially been erupting since June 2009, it was only in April 2010 that eruptions occurred beneath the Eyjafjallajökull glacier. Upon melting some of the ice, the water flowed to the lava, quickly fragmenting it into solid glass particles that were to be forced up into the atmosphere. It is these particles that made it so dangerous for flight during the worst of the ash cloud.
Historical records for the presently active volcano include four previous eruptions. In three of these, Katla has become active within two years and so experts have slashed the odds on it erupting in the near future. The precise reason for the temporal activity link between Eyjafjallajökull and Katla is not known, though whilst 25 Km apart, they are thought to have fissures running between them.
Iceland's Meteorological Office are currently monitoring Katla for seismic activity, though at present there is no indication of magma rising beneath it. However, if and when it does erupt (it has a history of erupting once every 50 years or so, with the last occasion being in 1918), the disruption could be huge, with a magma chamber ten times that of Eyjafjallajökull, and similar ice coverage to provide ash plume potential.
Iceland is used to tectonic activity, with the Mid-Atlantic ridge running through the country. The Western half of the island lies on the North American plate; the East on the Eurasion plate. These plates meet at a divergent boundary - the primary cause of the vast number of volcanoes in Iceland, and the earthquakes the country experiences.
Images: Top - Peter Vancoillie; Bottom - US Geological Survey.
Monday 3rd May 2010: Antifreeze blood
An international group has reported in Nature Genetics that they have discovered the secret to how the woolly mammoth coped with the freezing temperatures of Siberia. Utilising modern genetic techniques, including the insertion of RNA into E. coli, they have discovered a specific mutation within the mammoths' haemoglobin which would allow the elephants to cope with the extremes of the last ice age.
Whilst cold conditions usually inhibit haemoglobin's ability to release oxygen to the rest of the body, the mammoth's genes for the protein feature three key sections not witnessed in any present lineage of elephant, allowing for this lower temperature functionality.
The researchers utilised ~43,000-year-old preserved DNA samples to generate RNA. This was then used in the bacteria to produce a replica of the haemoglobin that the animals would have naturally formed in animals of the species, even up to a billion years ago. These proteins were shown to have relatively small temperature dependent-oxygen affinity. This is a key factor for cold inhabiting mammals and is absent in modern elephants. These different amino acid residues enabled minimal heat loss and as such were evolutionarily favourable during the ice age and for the animals that migrated towards the pole from their ancestors' home in equitorial Africa.
Image: ecoworld.com.
Friday 30th April 2010: Disease? It could all be in the genes
Last year, Professor Stephen Quake of Stanford University gained notoriety for sequencing his entire genome for less than $50,000. Flash forward a year and he's now become one of the first people on the planet to have his whole genome screened for susceptibility to disease.
The work published in Lancet (Vol. 373, 1525-1535, 2010) showed that whilst Prof. Quake is currently a perfectly healthy 40-year-old, he has genetic mutations (both single nucleotide polymorphisms (SNPs) and copy number variations) that indicated an increased genetic risk of sudden heart failure, type 2 diabetes and several types of cancer.
This work paves the way for the potential future of medicine, where individuals could be screened to see what they're most susceptible to, and possibly take measures in their lifestyle choices to avoid those outcomes as much as possible, such as dietary changes.
Whilst Prof. Quake had expected the possible heart problems to be indicated (there is a history of heart disease in his family), the increased risk of certain cancer types, in addition to the apparently significant reduced risk of suffering from Alzheimer's disease were unexpected. For more information see the report at the Stanford Medical School website.
Monday 26th April 2010: Happy 20th birthday Hubble!
Over the weekend, one of the most significant unmanned space missions reached its 20th Anniversary. After being plagued by errors and malfunctions during the first three years of observation, the Hubble Space Telescope has since provided images of our solar system, stars, galaxies, nebulae and much, much more.
At an orbit of 600 Km above Earth, Hubble suffers none of the diffractory problems experienced by telescopes observing from the surface. As such, Hubble is able to observe in both the ultraviolet and infrared frequency ranges, which are unfiltered in space, but blocked by our atmosphere. Among its discoveries over the past two decades, have been that of dark energy, which accelerates the expansion of the universe, and pinpointing the origins of the universe to between 13 and 14 billion years ago.
A full history of the mission, including details of specific findings, press releases, functionality of the microscope and much more, can be found at: NASA's hubble pages.
A site entirely devoted to the Hubble Mission is also available featuring even more information, as well as a full catalogue of the images that Hubble has taken over the years. This includes a special 20th Anniversary section, featuring documentaries and downloads to celebrate the images and discoveries of the mission.
For an introduction to Astronomy, I recommend the BBC's Solar System pages, including video contributions from Brian Cox and Patrick Moore.
Images: hubblesite.org.