Monday 18- Wednesday 20 September 2017,
Oculus Building, the University of Warwick
- Lunch, coffee and posters in Oculus 0.01
- Talks in Oculus 0.02
Monday 18th. 10:00-11:00 Registration and Coffee 11:00-11:30 WelcomeProf Matt Keeling, University of Warwick 11:30-12:30 Prof Ruth Baker, University of Oxford
"Bayesian inference for models of epithelial morphogenesis”
12:30-13:30 Lunch 13:30-14:30 Prof Michael Hochberg, Institut des Sciences de L'Evolution de Montpellier
"How Evolution and Environment Shape Cancer"Evolutionary theory explains why metazoan species are largely protected against the negative fitness effects of cancers. Nevertheless, cancer is observed across a range of species and sometimes at high prevalence. I present a simple model showing how life history traits (e.g., body size) are expected to coevolve with anti-cancer mechanisms. The insights of this model form the basis for understanding cancer incidence and resistance mechanisms in different species and across different human tissues.
Prof Ellen Baake, Universitat Bielefeld
"Modelling Lenski's experiment"
We reconsider the long-term evolution experiment of Lenski and, building
on  and , formulate an individual-based model that takes into
account the design of the experiment, the interaction between fitness
effects, as well as clonal interference. We analyse the model
analytically (for constant fitness effects) and by means of simulations
(for random fitness effects). We discuss the results in the light of
previous modelling approaches.
This is joint work with Adrian Gonzalez Casanova, Sebastian Probst, and
 M.J. Wiser, N. Ribeck, R.E. Lenski, Long-term dynamics of adaptation
in asexual populations, Science 342 (2013), 1364-1367
 A. Gonzalez Casanova, N. Kurt, A. Wakolbinger, L. Yuan, An
individual-based model for the Lenski experiment, and the deceleration
of the relative fitness. Stoch. Proc. Appl. 126 (2016), 2211--2252.
15:30-16:00 Coffee 16:00-17:00 Prof John Edmunds, London School of Hygiene & Tropical Medicine
“Modelling Ebola in West Africa”
"Assessing intervention responses against H5N1 avian influenza outbreaks in Bangladesh"
"A novel hybrid framework for reaction-diffusion processes"
"Modelling within-host immunity and between-host epidemiology in honey bees"
19:00 Dinner for Speakers
Tuesday 19th. 8:30 - 9:30 Coffee 9:30 - 10:30 Dr Katie Hampson, University of Glasgow
“Identifying the spatial scale of interactions resolves the mechanisms governing disease transmission"
10:30 - 11:30 Prof Jeff Gore, Massachusetts Institute of Technology
"Building microbial communities in the lab"
11:30 - 12:00 Coffee 12:00 - 13:00 Prof Michael Stumpf, Imperial College London
"Approximate Bayesian Catastrophes: Learning Epigenetic Landscapes from Single Cell Data"
Increasing availability of single cell data allows us to study cellular decision making processes in unprecedented detail. But coupled with state of the art statistical and computational methods it also allows us to revisit and apply some classical work of Christopher Zeeman and Rene Thom in catastrophe theory, I will outline how the combination of new data, novel Bayesian computational approaches, and classical theory results in reconstructed epigenetic landscapes that allow us to study stem cell differentiation processes; these landscapes are immediately interpretable and allow us to map out the gene expression patterns that accompany cellular differentiation processes.
13:00-14:00 Lunch 14:00-15:00 Prof Paul Martin, University of Bristol
"Headsups from Maths regarding the Charateristics of Attractants Drawing Immune Cells to Wounds"
15:00-16:00 Prof Fabian Theis, Technische Universitat Munchen 16:00-16:30 Coffee 16:30-17:30 Prof John Tyson, Virginia Tech 17:30-18:30 Short TalksLloyd Chapman
"Bayesian inference for spatial transmission of visceral leishmaniasis"Carlos Reding
"Antibiotic gradients maximise bacterial growth rate accelerating the evolution of resistance"Lorenzo Pellis
"Large variations in HIV-1 viral load explained by shifting-mosaic metapopulation dynamics"
19:00 Gala Dinner, Chacellor's Suite (Rootes Building)
Wednesday 20th 8:30 - 9:30 Coffee 9:30 - 10:30 Prof Thomas Höfer, DKFZ German Cancer Research Center
"Quantitating hematopoiesis"Hematopoietic stem cells produce an enormous diversity of cell types making up the blood and the immune system. Until recently, the major tool for probing hematopoiesis in vivo has been the transplantation of stem cells into irradiated mice. Recently, new genetic tools for the non-invasive labeling of hematopoietic stem cells have been developed that now allow us to map stem cell fate under physiological conditions. Using population-dynamic models and statistical inference, I will show that time-resolved fate mapping data are informative on the dynamics and the topology of the differentiation pathways emanating from stem cells. Our findings provide a quantitative measure for stem cell self-renewal, support the contested model of hierarchical hematopoietic differentiation, and challenge prevalent views on the maintenance and clonality of HSC in the bone marrow.
10:30 - 11:30 Dr Christopher Dye, World Health Organisation
“Systems analysis for sustainable development”
11:30 - 12:00 Coffee 12:00 - 13:00 Prof Simon Tavaré, CRUK Cambridge Institute
"Statistical inference from cancer sequencing data"I will describe some theoretical aspects of modelling cancer evolution, in particular what seems to be easy to infer and what seems to be hard. The methodology comes from the ABC and coalescent part of the subject, with due allowance for the cancer setting. I will also outline our recently funded project from the CRUK Grand Challenge competition, which will provide novel in-situ data in 3.5D on a vast scale.
13:00-14:00 Lunch 14:00-15:00 Prof Michael Dustin, Kennedy Institute
"Quantitative approaches to lymphocyte pathfinding and synapse formation”