Publications

2016

• Antonia P. Sagona, Aurelija M. Grigonyte, Paul MacDonald and Alfonso Jaramillo Integr. Biol., (2016) Genetically modified bacteriophages. 10.1039/C5IB00267B

• Lewis A. Baker, Michael D. Horbury, Simon E. Greenough, Florent Allais, Patrick S. Walsh, Scott Habershon and Vasilios G. Stavros (2016) Ultrafast Photoprotecting Sunscreens in Natural Plants. J. Phys. Chem. Lett. 7, 56-61.

2015

• Wen-Dong Quan, Anaïs Pitto-Barry, Lewis A. Baker, Eugen Stulz, Richard Napier, Rachel K. O'Reilly and Vasilios G. Stavros (2015) Retaining Individualities: The Photodynamics of Self-Ordering Porphyrin Assemblies. Chem. Commun. 52, 1938-1941.
• Kitchen P, Day RE, Salman MM, Conner MT, Bill RM, and Conner AC (2015) Beyond water homeostasis: Diverse functional roles of mammalian aquaporins. Biochim Biophys Acta. pii: S0304-4165(15)00236-6. DOI 10.1016/j.bbagen.2015.08.023.
• Lewis A. Baker, Michael D. Horbury, Simon E. Greenough, Philip M. Coulter, Tolga N. V. Karsili, Gareth M. Roberts, Andrew J. Orr-Ewing, Michael N. R. Ashfold, and Vasilios G. Stavros (2015) Probing the Ultrafast Energy Dissipation Mechanism of the Sunscreen Oxybenzone after UVA Irradiation. J. Phys. Chem. Lett. DOI 10.1021/acs.jpclett.5b00417
• Lewis A. Baker, Michael D. Horbury, Simon E. Greenough, Michael N. R. Ashfold and Vasilios G. Stavros (2015) Broadband ultrafast photoprotection by oxybenzone across the UVB and UVC spectral regions. Photochem. Photobiol. Sci. DOI 10.1039/C5PP00217F
• Lewis A. Baker and Scott Habershon (2015) Robustness, efficiency, and optimality in the Fenna-Matthews-Olson photosynthetic pigment-protein complex. J. Chem. Phys. DOI 10.1063/1.4930110
• Michael D. Horbury, Lewis A. Baker, Wen-Dong Quan, Jamie D. Young, Michael Staniforth, Simon E. Greenough, and Vasilios G. Stavros (2015) Bridging the Gap between the Gas Phase and Solution Phase: Solvent Specific Photochemistry in 4-tert-Butylcatechol. J. Phys. Chem. A: DOI 10.1021/acs.jpca.5b03621
• Yan Kang, Anaïs Pitto-Barry, Helen Willcock, Wen-Dong Quan, Nigel Kirby, Ana M. Sanchezc and Rachel K. O’Reilly (2015) Exploiting nucleobase-containing materials – from monomers to complex morphologies using RAFT dispersion polymerization. Polymer Chemistry 6: 106
• Anne B. Mabire, Mathew P. Robin, Wen-Dong Quan, Helen Willcock, Vasilios G. Stavrosa and Rachel K. O'Reilly (2015) Aminomaleimide fluorophores: a simple functional group with bright, solvent dependent emission. Chemical Commununications 51: 9733-9736
  
• C. E. Dow, H. A. van den Berg, D. I. Roper and A. Rodger (2015) Biological insights from a simulation model of the critical FtsZ accumulation required for prokaryotic cell division. Biochemistry 54: 3803-3813
  
• R. E. Sheldon, A. Shmygol, H. A. van den Berg and A. M. Blanks (2015) Functional and morphological development of the womb throughout life. Science Progress 98: 103-127

• David Perry, Rehab Al Botros, Dmitry Momotenko, Sophie L. Kinnear, and Patrick R. Unwin (2015) Simultaneous Nanoscale Surface Charge and Topographical Mapping. ACS Nano. 9: 7266–7276

• Yang-Rae Kim, Stanley C. S. Lai, Kim McKelvey, Guohui Zhang, David Perry, Thomas S. Miller, and Patrick R. Unwin (2015) Nucleation and Aggregative Growth of Palladium Nanoparticles on Carbon Electrodes: Experiment and Kinetic Model. J. Phys. Chem. C 119: 17389–17397
• Jonathan M. Lamley, Matthew J. Lougher, Hans Juergen Sass, Marco Rogowski, Stephan Grzesiek and Józef R. Lewandowski (2015) Unraveling the complexity of protein backbone dynamics with combined ¹³C and ¹⁵N solid-state NMR relaxation measurements. Phys. Chem. Chem. Phys. DOI: 10.1039/C5CP03484A
• Patten, H. V., Hutton, L. A., Webb, J. R., Newton, M. E., Unwin, P. R., & Macpherson, J. V. (2015) Electrochemical “read–write” microscale patterning of boron doped diamond electrodes. Chemical Communications 51: 164-167
• Jack Hassall, Paul MacDonald, Teresa Cordero, William Rostain and Alfonso Jaramillo (2015) Design and Characterization of Topological Small RNAs. Meth. Mol. Biol. 1316: 149-167
• P. Kitchen, R. E. Day, L. H. Taylor, M. M. Salman, R. M. Bill, M. T. Conner and A. C. Conner (2015) Identification and Molecular Mechanisms of the Rapid Tonicity-induced Relocalization of the Aquaporin 4 ChannelJ. Biol. Chem. 290: 16873-16881

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• Lock A, Forfar R, Weston C, Bowsher L, Upton G, Reynolds C, Ladds G, Dixon AM (2014) One motif to bind them: A small-XXX-small motif affects transmembrane domain 1 oligomerization, function, localization, and cross-talk between two yeast GPCRs PMID: 25157670 DOI: 10.1016/j.bbamem.2014.08.019
• Robert C. Deller, Manu Vatish, Daniel A. Mitchell & Matthew I. Gibson (2014) Synthetic polymers enable non-vitreous cellular cryopreservation by reducing ice crystal growth during thawing. Nature Communications
• Arasaradnam RP, Westenbrink E, McFarlane MJ, Harbord R, Chambers S, et al. (2014) Differentiating Coeliac Disease from Irritable Bowel Syndrome by Urinary Volatile Organic Compound Analysis – A Pilot Study. PLoS ONE 9(10): e107312. doi:10.1371/journal.pone.0107312
• Sheldon, R.E., Mashayamombe, C., Shi, S-Q., Garfield, R.E., Shmygol, A., Blanks, A.M. & van den Berg, H.A. (2014) Alterations in gap junction connexin43/connexin45 ratio mediate a transition from quiescence to excitation in a mathematical model of the myometrium. J. R. Soc. Interface, 11(101), 20140726.
  
• Richards, S-J., Gibson, M. I., ACS (2014) Optimization of the Polymer Coating for Glycosylated Gold Nanoparticle Biosensors to Ensure Stability and Rapid Optical Readouts. Macro Letters 3:1004-1008.
  
• Richards, S-J., Fullam, E.C., Besra, G.S., Gibson, M.I. J. (2014) Discrimination between bacterial phenotypes using glyco-nanoparticles and the impact of polymer coating on detection readouts. Mater. Chem. B 2:1490-1498.
• Jones, M.W., Otten, L., Richards, S-J., Lowery, R., Phillips D.J., Haddleton D.M., and Gibson M.I. (2014) Glycopolymers with secondary binding motifs mimic glycan branching and display bacterial lectin selectivity in addition to affinity. Chem. Sci. 5:1611-1616.
  
• Grimaldi AD, Maki T, Fitton BP, Roth D, Yampolsky D, Davidson MW, Svitkina T, Straube A, Hayashi I, Kaverina I. (2014) CLASPs are required for proper microtubule localization of end-binding proteins. Dev Cell. 30(3):343-52. doi: 10.1016/j.devcel.2014.06.026. PubMed PMID: 25117684; PubMed Central PMCID: PMC4133696
• Faulkner AD, Kaner RA, Abdallah QMA, Clarkson G, Fox DJ, Gurnani P, Howson SE, Phillips RM, Roper DI,Simpson DH, Peter Scott P (2014) Asymmetric triplex metallohelices with high and selective activity against cancer cells. Nature Chemistry 6, 797–803 doi:10.1038/nchem.2024
• Covington JA, Westenbrink EW, Ouaret N, Harbord R, Bailey C, O'Connell N, Cullis J, Williams N, Nwokolo CU, Bardhan KD, Arasaradnam RP (2013) Application of a Novel Tool for Diagnosing Bile Acid Diarrhoea. Sensors 13: 11899-11912
• Rodolis MT, Mihalyi A, O’Reilly AM, Slikas J, Roper DI, Hancock REM, Bugg TD (2014) Identification of a novel inhibition site in translocase MraY, based upon the site of interaction with lysis protein E from bacteriophage phiX174. Chem. BioChem. 15: 1300-1308
• O’Reilly AM, Galley NG, Roper DI (2014) Prospects for Novel Inhibitors of Peptidoglycan Transglycosylases BioOrganic Chemistry 55: 16-26
• Feillet C, Krusche P, Tamaninic F, Janssens RC, Downey MJ, Martina P, Teboula M, Saito S, Lévi FA, Bretschneider T, van der Horst GTJ, Delaunay F, Rand DA (2014) Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle. PNAS doi/10.1073/pnas.1320474111
• Wilkins LE, Phillips DJ, Deller RC, Davies G-L, Gibson MI (2014) Synthesis and Characterisation of Glucose-Functional Glycopolymers and Gold Nanoparticles: Study of their Potential Interactions with Ovine Red Blood Cells. Carbohydrate Research
• Kim McKelvey, David Perry, Joshua C Byers, Alex W. Colburn, and Patrick R. Unwin (2014) Bias-Modulated Scanning Ion Conductance Microscopy. Anal. Chem. 86: 3639−3646
• Kim McKelvey, Sophie L. Kinnear, David Perry, Dmitry Momotenko, and Patrick R. Unwin (2014) Surface Charge Mapping With a Nanopipette. J. Am. Chem. Soc. 136: 13735–13744

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• Day RE, Kitchen P, Owen DS, Bland C, Marshall L, Conner AC, Bill RM, Conner MT (2013) Human aquaporins: Regulators of transcellular water flow. PubMed.
• Thomas MG, Covington JA, Wall MJ (2013) A chamber for the perfusion of in vitro tissue with multiple solutions. Journal of Neurophysiology 110: 269-277.
• Sheldon RE, Baghdadi M, McCloskey C, Blanks AM, Shmygol A, van den Berg, HA (2013) Spatial heterogeneity enhances and modulates excitability in a mathematical model of the myometrium. Journal of The Royal Society Interface 10.
• Probert F, Whittaker SB-M, Crispin M, Mitchell DA, Dixon AM (2013) Solution NMR analyses of the C-type carbohydrate recognition domain of DC-SIGNR reveal different binding modes for HIV-derived oligosaccharides and smaller glycan fragments. Journal of Biological Chemistry.
• Otten L, Richards S-J, Fullam E, Besra GS, Gibson MI (2013) Gold nanoparticle-linked analysis of carbohydrate-protein interactions, and polymeric inhibitors, using unlabelled proteins; easy measurements using a 'simple' digital camera. Journal of Materials Chemistry B 1: 2665-2672.
• N.S. Burkoff CVaDLW (2013) Predicting protein beta-sheet contacts using a maximum entropy based correlated mutation measure. Bioinformatics 29: 580-587.
• McLachlan J, Smith D, Chmel N, Rodger A (2013) Calculation of flow-induced orientation distributions for analysis of linear dichroism spectroscopy. Soft Matter 9: 4977-4984.
• McKelvey K, O'Connell MA, Unwin PR (2013) Meniscus confined fabrication of multidimensional conducting polymer nanostructures with scanning electrochemical cell microscopy (SECCM). Chemical Communications 49: 2986-2988.
• McKelvey K, Nadappuram BP, Actis P, Takahashi Y, Korchev YE, et al. (2013) Fabrication, Characterization, and Functionalization of Dual Carbon Electrodes as Probes for Scanning Electrochemical Microscopy (SECM). Analytical Chemistry: ASAP.
• McKelvey K, Martin S, Robinson C, Unwin PR (2013) Quantitative Local Photosynthetic Flux Measurements at Isolated Chloroplasts and Thylakoid Membranes Using Scanning Electrochemical Microscopy (SECM). The Journal of Physical Chemistry B 117: 7878-7888.
• Lazenby RA, McKelvey K, Unwin PR (2013) Hopping Intermittent Contact-Scanning Electrochemical Microscopy (HIC-SECM): Visualizing Interfacial Reactions and Fluxes from Surfaces to Bulk Solution. Analytical Chemistry 85: 2937-2944.
• Jones MW, Richards S-J, Haddleton DM, Gibson MI (2013) Poly(azlactone)s: versatile scaffolds for tandem post-polymerisation modification and glycopolymer synthesis. Polymer Chemistry 4: 717-723.
• Gou Y, Geng J, Richards S-J, Burns J, Remzi Becer C, et al. (2013) A detailed study on understanding glycopolymer library and Con A interactions. Journal of Polymer Science Part A: Polymer Chemistry 51: 2588-2597.
• Freese C, Unger RE, Deller RC, Gibson MI, Brochhausen C, et al. (2013) Uptake of poly(2-hydroxypropylmethacrylamide)-coated gold nanoparticles in microvascular endothelial cells and transport across the blood-brain barrier. Biomaterials Science 1: 824-833.
• Evans ND, Moyse HAJ, Lowe D, Briggs D, Higgins R, et al. (2013) Structural identifiability of surface binding reactions involving heterogeneous analyte: application to surface plasmon resonance experiments. Automatica 49: 48-57.
• Ebejer N, Güell AG, Lai SCS, McKelvey K, Snowden ME, et al. (2013) Scanning Electrochemical Cell Microscopy: A Versatile Technique for Nanoscale Electrochemistry and Functional Imaging. Annual Review of Analytical Chemistry 6: 329-351.
• Dow CE, Rodger A, Roper DI, Berg HAvd (2013) A model of membrane contraction predicting initiation and completion of bacterial cell division. Integrative Biology 5: 778-795.
• Deller RC, Congdon T, Sahid MA, Morgan M, Vatish M, et al. (2013) Ice recrystallisation inhibition by polyols: comparison of molecular and macromolecular inhibitors and role of hydrophobic units. Biomaterials Science 1: 478-485.
• Cheeseman LP, Harry EF, McAinsh AD, Prior IA, Royle SJ (2013) Specific removal of TACC3/ch-TOG/clathrin at metaphase deregulates kinetochore fiber tension. Cell Science 126: 2102-2113.
• Bitziou E, Snowden ME, Joseph MB, Leigh SJ, Covington JA, et al. (2013) Dual electrode micro-channel flow cell for redox titrations: Kinetics and analysis of homogeneous ascorbic acid oxidation. Journal of Electroanalytical Chemistry 692: 72-79.
• Arasaradnam RP, Ouaret N, Thomas MG, Quraishi N, Heatherington E, et al. (2013) A novel tool for noninvasive diagnosis and tracking of patients with inflammatory bowel disease. Inflammatory Bowel Diseases 19: 999-1003.
• Al-Lehyani IH, Grime JMA, Bano M, McKelvey K, Allen MP (2013) Coarse-grained simulation of transmembrane peptides in the gel phase. Journal of Computational Physics 238: 97-105.
• Sansuk S, Bitziou E, Joseph MB, Covington JA, Boutelle MG, et al. (2013) Ultrasensitive Detection of Dopamine Using a Carbon Nanotube Network Microfluidic Flow Electrode. Analytical Chemistry 85: 163-169.
• Lu, J., Zhang, W., Richards, S-J., Gibson, M.I., Chen, G. (2013) Glycopolymer-coated Gold Nanorods Synthesied by a One Pot Copper(0) Catalyzed Tandem RAFT/Click Reaction Polym. Chem. 5:2326-2332
• Thake, T. H., Webb, J. R., Nash, A., Rappoport, J. Z., Notman, R. (2013) Permeation of polystyrene nanoparticles across model lipid bilayer membranes. Soft Matter, 9(43):10265-10274
• T H Cheffings, M R Lees, G Balakrishnan and O A Petrenko (2013) Magnetic field-induced ordering in SrDy₂O₄. J. Phys.: Condens. Matter 25 256001. doi:10.1088/0953-8984/25/25/256001

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• Snowden ME, Güell AG, Lai SCS, McKelvey K, Ebejer N, et al. (2012) Scanning electrochemical cell microscopy: theory and experiment for quantitative high resolution spatially-resolved voltammetry and simultaneous ion-conductance measurements. Analytical Chemistry 84: 2483-2491.
• Saaka Y, Deller RC, Rodger A, Gibson MI (2012) Exploiting Thermoresponsive Polymers to Modulate Lipophilicity: Interactions with Model Membranes. Macromolecular Rapid Communications 33: 779 - 784.
• Richards S-J, Jones M, Hunaban M, Haddleton D, Gibson MI (2012) Probing Bacterial Toxin Inhibition with Synthetic Glycopolymers using Tandem Post-Polymerization Modification: Role of Linker and Carbohydrate Density. Angewandte Chemie International Edition 51: 7812–7816.
• Patten HV, Meadows KE, Hutton LA, Iacobini JG, Battistel D, et al. (2012) Electrochemical Mapping Reveals Direct Correlation between Heterogeneous Electron Transfer Kinetics and Local Density of States in Diamond Electrodes. Angewandte Chemie (International ed in English) 51: 7002–7006.
• Patel AN, McKelvey K, Unwin PR (2012) Nanoscale Electrochemical Patterning Reveals the Active Sites for Catechol Oxidation at Graphite Surfaces. Journal of the American Chemical Society 134: 20246-20249.
• Patel AN, Collignon MG, O’Connell MA, Hung WOY, McKelvey K, et al. (2012) A New View of Electrochemistry at Highly Oriented Pyrolytic Graphite. Journal of the American Chemical Society 134: 20117-20130.
• Moyse HAJ, Lowe D, Briggs D, Higgins R, Bentall A, et al. (2012) Estimation of antibody binding affinities in incompatible blood type renal transplants from surface plasmon resonance. 8th IFAC Symposium on Biological and Medical Systems 2012: 97.
• McGeouch C-A, Peruffo M, Edwards MA, Bindley LA, Lazenby RA, et al. (2012) Quantitative Localized Proton-Promoted Dissolution Kinetics of Calcite Using Scanning Electrochemical Microscopy (SECM). The Journal of Physical Chemistry C 116: 14892-14899.
• Lai SCS, Patel AN, McKelvey K, Unwin PR (2012) Definitive Evidence for Fast Electron Transfer at Pristine Basal Plane Graphite from High-Resolution Electrochemical Imaging. Angewandte Chemie (International ed in English) 51: 5405–5408.
• Ieong NS, Hasan M, Phillips DJ, Saaka Y, O'Reilly RK, et al. (2012) Polymers with molecular weight dependent LCSTs are essential for cooperative behaviour. Polymer Chemistry 3: 794–799.
• Heal JW, Jimenez-Roldan JE, Wells SA, Freedman RB, Römer RA (2012) HIV-1 protease: the rigidity perspective. Bioinformatics 28: 350-357.
• Guell AG, Ebejer N, Snowden ME, McKelvey K, Macpherson JV, et al. (2012) Quantitative nanoscale visualization of heterogeneous electron transfer rates in 2D carbon nanotube networks. Proceedings of the National Academy of Sciences 109: 11484-11486.
• Gou Y, Richards S-J, Haddleton D, Gibson MI (2012) Investigation of Glycopolymer-Lectin Interactions using QCM-d: Comparison of Surface Binding with Inhibitory Activity. Polymer Chemistry 3: 1634 - 1640.
• Covington JA, Wedlake L, Andreyev J, Ouaret N, Thomas MG, et al. (2012) The Detection of Patients at Risk of Gastrointestinal Toxicity during Pelvic Radiotherapy by Electronic Nose and FAIMS: A Pilot Study. Sensors 12: 13002-13018.
• Corrêa SAL, Hunter CJ, Palygin O, Wauters SC, Martin KJ, et al. (2012) MSK1 Regulates Homeostatic and Experience-Dependent Synaptic Plasticity. The Journal of Neuroscience 32: 13039-13051.
• Conner M, Conner A, Bland C, Taylor L, Brown J, et al. (2012) Rapid aquaporin translocation regulates cellular water flow: mechanism of hypotonicity-induced subcellular localization of aquaporin 1 water channel. Journal of Biological Chemistry 287: 11516-11525.
• Cheng X, Joseph MB, Covington JA, Dafforn TR, Hicks MR, et al. (2012) Continuous-channel flow linear dichroism. Analytical Methods 4: 3169-3173.
• Burkoff N, Varnai C, Wells S, D W (2012) Exploring the Energy Landscapes of Protein Folding Simulations with Bayesian Computation. Biophysical Journal 102: 878-886.
• Beevers AJ, Nash A, Salazar-Cancino M, Scott D, J., Notman R, et al. (2012) Effects of the oncogenic V664E mutation on membrane insertion, structure, and interactions of the Neu transmembrane domain: Mechanistic insights revealed from biophysical analyses and molecular dynamics simulation. Biochemistry 51: 2558-2568.
• Baxter L, Jironkin A, Hickman R, Moore J, Barrington C, et al. (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell Online 24: 3949-3965.
• Arasaradnam R, Ouaret N, Thomas M, Hetherington E, Quraishi M, et al. (2012) Identification of inflammatory bowel disease (IBD) using field asymmetric ion mobility spectrometry (FAIMS). Gut 61: A70.
• Arasaradnam R, Ouaret N, Thomas M, Gold P, Quraishi N, et al. (2012) Evaluation of gut bacterial populations using an Electronic ‘e’ Nose and FAIMS (Field Asymmetric Ion Mobility Spectrometry): Further insights into ‘Fermentonomics. Journal of Medical Engineering and Technology 36: 333-337.

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• Vladimirou E, Harry E, Burroughs N, McAinsh A (2011) Springs, clutches and motors: driving forward kinetochore mechanism by modelling. Chromosome Research 19: 409-421.
  
• Smith B, Chen Z, Reimers L, Doorslaer Kv, Schiffman M, et al. (2011) Sequence Imputation of HPV16 Genomes for Genetic Association Studies. PLoS ONE 6(6): e21375.
• Silver BR, Fulop V, Unwin PR (2011) Protein crystallization at oil/water interfaces. New Journal of Chemistry 35: 602-606.
• Robin D. Fisher MMM, Michael E. Snowden, Maxim B. Joseph, James A. Covington, Patrick R. Unwin, and Richard I. Walton (2011) Dissolution Kinetics of polycrystalline Calcium Sulfate-Based Materials: Influence of Chemical Modification. ACS Applied Materials and Interfaces 3: 3528-3537.
• Pacheco-Gómez R, Roper DI, Dafforn TR, Rodger A (2011) The pH Dependence of Polymerization and Bundling by the Essential Bacterial Cytoskeltal Protein FtsZ. PLoS ONE 6(6): e19369.
• McKelvey K, Snowden ME, Peruffo M, Unwin PR (2011) Quantitative Visualization of Molecular Transport through Porous Membranes: Enhanced Resolution and Contrast Using Intermittent Contact-Scanning Electrochemical Microscopy. Analytical Chemistry 83: 6447-6454.
• Mbogoro MM, Snowden ME, Edwards MA, Peruffo M, Unwin PR (2011) Intrinsic Kinetics of Gypsum and Calcium Sulfate Anhydrite Dissolution: Surface Selective Studies under Hydrodynamic Control and the Effect of Additives. The Journal of Physical Chemistry C 115: 10147-10154.
• Kang J, Xu B, Lin W, Yao Y, Hennessy C, et al. (2011) A Dynamical Model Reveals Gene Co-Localizations in Nucleus. PloS Computational Biology 7(7): e1002094.
• Jenei ZA, Warren GZL, Hasan M, Zammit VA, Dixon AM (2011) Packing of transmembrane domain 2 of carnitine palmitoyltransferase-1A affects oligomerization and malonyl-CoA sensitivity of the mitochondrial outer membrane protein. The FASEB Journal 25: 4522-4530.
• Heal JW, Wells SA, Jimenez-Roldan JE, Freedman RF, Römer RA (2011) Rigidity analysis of HIV-1 protease. Journal of Physics: Conference Series 286: 012006.
• Edwards MA, Whitworth AL, Unwin PR (2011) Quantitative Analysis and Application of Tip Position Modulation-Scanning Electrochemical Microscopy. Analytical Chemistry 83: 1977-1984.
• Downey MJ, Vance KW, Bretschneider T (2011) LineageTracker: A statistical scoring method for tracking cell lineages in large cell populations with low temporal resolution. IEEE International Symposium on Biomedical Imaging 1913-1916.
• Downey MJ, Jeziorska DM, Ott S, Tamai TK, Koentges G, et al. (2011) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PLoS One 6: e27886.
  
• Chen R, Pearce DJG, Fortuna S, Cheung DL, Bon SAF (2011) Polymer Vesicles with a Colloidal Armor of Nanoparticles. Journal of the American Chemical Society 133: 2151-2153.
• Chan Y-W, Mohr R, Millard AD, Holmes AB, Larkum AW, et al. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution 28:2269-2274.
  
• Bolhuis A, Richards AD (2011) Metallointercalators - Synthesis and Techniques to Probe their Interactions with Biomolecules. New York: Springer-Verlag. pp. 373-388.
• Arasaradnam RP, Quraishi N, Kyrou I, Nwokolo CU, Joseph M, et al. (2011) Insights into 'fermentonomics': evaluation of volatile organic compounds (VOCs) in human disease using an electronic 'e-nose'. Journal of Medical Engineering and Technology 35: 87-91.
• Bolhuis A, Hand L, Marshall JE, Richards AD, Rodger A, et al. (2011) Antimicrobial activity of ruthenium-based intercalators. European Journal of Pharmaceutical Sciences 42: 313–317.

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• Zhang M, Powell HV, Mackenzie SR, Unwin PR (2010) Kinetics of Porphyrin Adsorption and DNA-Assisted Desorption at the Silica−Water Interface. Langmuir 26: 4004-4012.
• Waldron D, Marrington R, Grant M, Hicks M, Rodger A (2010) Capillary circular dichroism. Chirality 22: E136–E141.
• Stegle O, Denby K, Cooke EJ, Wild DL, Ghahramani Z, et al. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Cell Biology 17: 355-367.
• Sanchez-Romero MA, Busby SJ, Dyer NP, Ott S, Millard AD, et al. (2010) Dynamic distribution of seqa protein across the chromosome of escherichia coli K-12. mBio 1: e00012.
  
• Reid J, Evans K, Dyer N, Wernisch L, Ott S (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics 11: 30.
• McKelvey K, Edwards MA, Unwin PR (2010) Intermittent contact-scanning electrochemical microscopy (IC-SECM): a new approach for tip positioning and simultaneous imaging of interfacial topography and activity. Analytical Chemistry 82: 6334-6337.
• McGeouch CA, Edwards MA, Mbogoro MM, Parkinson C, Unwin PR (2010) Scanning Electrochemical Microscopy as a Quantitative Probe of Acid-Induced Dissolution: Theory and Application to Dental Enamel. Analytical Chemistry 82: 9322-9328.
• McGavin WJ, Cock PJA, MacFarlane SA (2010) Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology 60: 462-467.
  
• Koohy H, Dyer NP, Reid JE, Koentges G, Ott S (2010) An alignment-free model for comparison of regulatory sequences. Bioinformatics 26: 2391-2397.
• Jiang H, Wang F, Dyer NP, Wong WH (2010) CisGenome Browser: a flexible tool for genomic data visualization. Bioinformatics 26: 1781-1782.
• Holmes AB, Kalvala S, Whitworth DE (2010) Spatial Simulations of Myxobacterial Development. PLoS Computational Biology 6: e1000686.
• Güell AG, Meadows KE, Unwin PR, Macpherson JV (2010) Trace voltammetric detection ofserotonin at carbon electrodes: comparison of glassy carbon, boron doped diamond and carbon nanotube network electrodes. Phys Chem Chem Phys 12: 10108-10114.
• Grime JMA, Khan MO, Bohinc K (2010) Interaction between Charged Surfaces Mediated by Rodlike Counterions: The Influence of Discrete Charge Distribution in the Solution and on the Surfaces. Langmuir 26: 6343-6349.
• Grime JMA, Khan MO (2010) Decreased Osmotic Pressure via Interfacial Charge Clustering. The Journal of Physical Chemistry B 114: 10049-10056.
• Grime JMA, Khan MO (2010) Effects of Discrete Charge Clustering in Simulations of Charged Interfaces. Journal of Chemical Theory and Computation 6: 3205-3211.
• Fumagalli L, Gramse G, Esteban-Ferrer D, Edwards MA, Gomila G (2010) Quantifying the dielectric constant of thick insulators using electrostatic force microscopy. Applied Physics Letters 96: 183107.
  
• Eriksson A, Nilsson Jacobi M, Nyström J, Tunstrøm K (2010) Determining interaction rules in animal swarms. Behavioral Ecology 21: 1106-1111.
• Ebejer N, Schnippering M, Colburn AW, Edwards MA, Unwin PR (2010) Localized High Resolution Electrochemistry and Multifunctional Imaging: Scanning Electrochemical Cell Microscopy. Analytical Chemistry 82: 9141-9145.
• Damianoglou A, Rodger A, Pridmore C, Dafforn T, Mosely J, et al. (2010) The synergistic action of melittin and phospholipase A2 with lipid membranes: a development of linear dichroism for membrane-insertion kinetics. Protein and Peptide Letters 17: 1351-1362.
• Cock PJA, Whitworth DE (2010) Evolution of Relative Reading Frame Bias in Unidirectional Prokaryotic Gene Overlaps. Molecular Biology and Evolution 27: 753-756.
• Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM (2010) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research 38: 1767-1771.
• Armond JW, Turner MS (2010) Force Transduction by the Microtubule-Bound Dam1 Ring. Biophysical Journal 98: 1598-1607.

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• Wu J, Sinfield JL, Buchanan-Wollaston V, Feng J (2009) Impact of environmental inputs on reverse-engineering approach to network structures. BMC Systems Biology 3: 113.
• Wilson RJ (2009) Kinesin's walk: Springy or gated head coordination? Biosystems 96: 121-126.
• Williams CG, Edwards MA, Colley AL, Macpherson JV, Unwin PR (2009) Scanning micropipet contact method for high-resolution imaging of electrode surface redox activity. Analytical Chemistry 81: 2486-2495.
• Whitworth D, Cock P (2009) Evolution of prokaryotic two-component systems: insights from comparative genomics. Amino Acids 37: 459-466.
• Warren G, Oates J, Robinson C, Dixon AM (2009) Contributions of the Transmembrane Domain and a Key Acidic Motif to Assembly and Function of the TatA Complex. Journal of Molecular Biology 388: 122-132.
• Vladimirou E, Li M, Aldridge CP, Frigerio L, Kirkilionis M, et al. (2009) Diffusion of a membrane protein, Tat subunit Hcf106, is highly restricted within the chloroplast thylakoid network. FEBS letters 583: 3690-3696.
• Schnippering M, Powell HV, Mackenzie SR, Unwin PR (2009) Real-Time Monitoring of Polyaniline Nanoparticle Formation on Surfaces. The Journal of Physical Chemistry C 113: 20221-20227.
• Rittman M, Gilroy E, Koohy H, Rodger A, Richards A (2009) Is DNA a worm-like chain in Couette flow? In search of persistence length, a critical review. Science Progress 92: 163-204.
• Richards AD, Rodger A, Hannon MJ, Bolhuis A (2009) Antimicrobial activity of an iron triple helicate. International Journal of Antimicrobial Agents 33: 469-472.
• Millard AD, Zwirglmaier K, Downey MJ, Mann NH, Scanlan DJ (2009) Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution. Environmental Microbiology 11: 2370-2387.
• Li F, Edwards M, Guo J, Unwin PR (2009) Silver Particle Nucleation and Growth at Liquid/Liquid Interfaces: A Scanning Electrochemical Microscopy Approach. The Journal of Physical Chemistry C 113: 3553-3565.
• Kamei H (2009) The existence and classification of synchrony-breaking bifurcations in regular homogeneous networks using lattice structures. International Journal of Bifurcation and Chaos 19: 3707-3732.
• Kamei H (2009) Construction of lattices of balanced equivalence relations for regular homogeneous networks using lattice generators and lattice indices. International Journal of Bifurcation and Chaos 19: 3691-3705.
• Jones JT, Kumar A, Pylypenko LA, Thirugnanasambandam A, Castelli L, et al. (2009) Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Molecular Plant Pathology 10: 815-828.
• Hicks M, Dafforn T, Damianoglou A, Wormell P, Rodger A, et al. (2009) Synchrotron radiation linear dichroism spectroscopy of the antibiotic peptide gramicidin in lipid membranes. The Analyst 134:1623-1628.
• Eriksson A, Tunstrom K (2009) On the microscopic foundation of dissipative particle dynamics. EPL (Europhysics Letters) 86: 44001.
• Eriksson A, Jacobi MN, Nystrom J, Tunstrom K (2009) Bottom-up derivation of an effective thermostat for united atoms simulations of water. The Journal of Chemical Physics 130: 164509-164506.
• Edwards MA, Williams CG, Whitworth AL, Unwin PR (2009) Scanning Ion Conductance Microscopy: a Model for Experimentally Realistic Conditions and Image Interpretation. Analytical Chemistry 81: 4482-4492.
• Edwards MA, Bertoncello P, Unwin PR (2009) Slow Diffusion Reveals the Intrinsic Electrochemical Activity of Basal Plane Highly Oriented Pyrolytic Graphite Electrodes. The Journal of Physical Chemistry C 113: 9218-9223.
• Dyer N (2009) Tubulin and its prokaryotic homologue FtsZ: a structural and functional comparison. Science Progress 92: 113-137.
• Cooke EJ, Savage RS, Wild DL (2009) Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks. Seminars in Cell & Developmental Biology 20: 863-868.
• Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25: 1422-1423.
• Bouchekhima AN, Frigerio L, Kirkilionis, M (2009) Geometric quantification of the plant endoplasmic reticulum. Journal of Microscopy 234: 158-172.
• Powell HV, Schnippering M, Mazurenka M, Macpherson JV, Mackenzie SR, et al. (2009) Evanescent Wave Cavity Ring-Down Spectroscopy as a Probe of Interfacial Adsorption: Interaction of Tris(2,2′-bipyridine)ruthenium(II) with Silica Surfaces and Polyelectrolyte Films. Langmuir 25: 248-255.

²⁰⁰⁸

• Wilson RJ (2008) Towards a cure for dementia: the role of axonal transport in Alzheimer's disease. Science Progress 91: 65-80.
• Wilson R (2008) Simulating the Kinesin Walk: A Small Step towards Understanding Dementia. Computer Modeling and Simulation, UKSIM European Symposium on 0: 226-231.
• Whitworth DE, Holmes AB, Irvine AG, Hodgson DA, Scanlan DJ (2008) Phosphate Acquisition Components of the Myxococcus xanthus Pho Regulon Are Regulated by both Phosphate Availability and Development. Journal of Bacteriology 190: 1997-2003.
• Whitworth DE, Cock PJA (2008) Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships. Microbiology 154: 360-372.
• Silver BR, Unwin PR (2008) Protein crystals make it big at electrode surfaces. Chemical Communications: 5179-5181.
• Schnippering M, Powell HV, Zhang M, Macpherson JV, Unwin PR, et al. (2008) Surface Assembly and Redox Dissolution of Silver Nanoparticles Monitored by Evanescent Wave Cavity Ring-Down Spectroscopy. The Journal of Physical Chemistry C 112: 15274-15280.
• Qian M, Wilson RJ, Feng JF (2008) Efficiency of Brownian motors in terms of entropy production rate. EPL (Europhysics Letters) 84: 10014.
• Pattaranit R, van den Berg HA, Spanswick D (2008) The development of insulin resistance in Type 2 diabetes: insights from knockout studies. Science Progress 91: 285-316.
• Pattaranit R, van den Berg HA (2008) Mathematical models of energy homeostasis. Journal of The Royal Society Interface 5: 1119-1135.
• Koohy H (2008) On finiteness of multiplication modules. Acta Mathematica Hungarica 118: 1-7.
• Hicks M, Damianoglou A, Rodger A, Dafforn T (2008) Folding and membrane insertion of the pore-forming peptide gramicidin occur as a concerted process. Journal of Molecular Biology 383: 358-366.
• Grime JMA, Edwards MA, Unwin PR (2008) Reply to Missner et al.: Timescale for passive diffusion across bilayer lipid membranes. Proceedings of the National Academy of Sciences 105: E124.
• Grime JMA, Edwards MA, Rudd NC, Unwin PR (2008) Quantitative visualization of passive transport across bilayer lipid membranes. Proceedings of the National Academy of Sciences 105: 14277-14282.
• Eriksson A, Jacobi MN, Nystrom J, Tunstrom K (2008) Using force covariance to derive effective stochastic interactions in dissipative particle dynamics. Physical Review E 77: 016707.
• Eriksson A, Jacobi MN, Nystrom J, Tunstrom K (2008) Effective thermostat induced by coarse graining of simple point charge water. The Journal of Chemical Physics 129: 024106-024108.
• Damianoglou A, Crust EJ, Hicks MJ, Howson SE, Knight AE, et al. (2008) A new reference material for UV-visible circular dichroism spectroscopy. Chirality 20: 1029-1038.

2007

• Richards AD, Rodger A (2007) Synthetic metallomolecules as agents for the control of DNA structure. Chemical Society Reviews 36: 471-483.
• Leszczyszyn OI, Evans CD, Keiper SE, Warren GZL, Blindauer CA (2007) Differential reactivity of individual zinc ions in clusters from bacterial metallothioneins. Inorganica Chimica Acta 360: 3-13.
• Cock PJA, Whitworth DE (2007) Evolution of Prokaryotic Two-Component System Signaling Pathways: Gene Fusions and Fissions. Molecular Biology and Evolution 24: 2355-2357.
• Cock P, Whitworth D (2007) Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System Genes. Journal of Molecular Evolution 64: 457-462.
• Chan Y-W, Nenninger A, Clokie SJH, Mann NH, Scanlan DJ, et al. (2007) Pigment composition and adaptation in free-living and symbiotic strains of Acaryochloris marina. FEMS Microbiology Ecology 61: 65-73.

2006

• Sinfield JL, Collins DR (2006) Induction of synchronous oscillatory activity in the rat lateral amygdala in vitro is dependent on gap junction activity. The European Journal of Neuroscience 24: 3091-3095.
• Rodger A, Marrington R, Geeves MA, Hicks M, de Alwis L, et al. (2006) Looking at long molecules in solution: what happens when they are subjected to Couette flow? Physical Chemistry Chemical Physics 8: 3161-3171.
• Rajendra J, Damianoglou A, Hicks M, Booth P, Rodger P, et al. (2006) Quantitation of protein orientation in flow-oriented unilamellar liposomes by linear dichroism. Chemical Physics 326: 210-220.
• Edwards MA, Martin S, Whitworth AL, Macpherson JV, Unwin PR (2006) Scanning electrochemical microscopy: principles and applications to biophysical systems. Physiological Measurement 27: R63-108.
• Bitziou E, Rudd NC, Edwards MA, Unwin PR (2006) Visualization and Modeling of the Hydrodynamics of an Impinging Microjet. Analytical Chemistry 78: 1435-1443.

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• Jacobi MN, Rasmussen S, Tunstrøm K (2005) Modelling the dynamics of a minimal protocell container. International Journal of Astrobiology 4: 81-91.
• Addinall SG, Johnson KA, Dafforn T, Smith C, Rodger A, et al. (2005) Expression, purification and crystallization of the cell-division protein YgfE from Escherichia coli. Acta Crystallographica Section F: Structural Biology and Crystallization Communications 61: 305–307.

^Patents

^{UK patent application "Preservation of Cells"}

^{Intermittent Contact SECM, Patent Application No. GB2011/050747}

^{Scanning Electrochemical Microscopy, UK Patent Application No. 1207775.6}