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Publications in Microbiology

Applications of genome-scale metabolic models to investigate microbial metabolic adaptations in response to genetic or environmental perturbations”, Elena Lucy Carter, Chrystala Constantinidou, Mohammad Tauqeer Alam, Briefings in Bioinformatics, 2024

 

"A Temperature-Induced Metabolic Shift in the Emerging Human Pathogen Photorhabdus asymbiotica", Elena Carter, Nicholas Waterfield, Chrystala Constantinidou, Mohammad Alam, mSystems, 2024

 

EnteroBase in 2025: exploring the genomic epidemiology of bacterial pathogens”, Nigel P Dyer, Birgitta Päuker, Laura Baxter, Anshul Gupta, Boyke Bunk, Jörg Overmann, Margo Diricks, Viola Dreyer, Stefan Niemann, Kathryn E Holt, Mohammed Rahman, Paul E Brown, Richard Stark, Zhemin Zhou, Sascha Ott, Ulrich Nübel, Nucleic Acids Research, 2024

 

Centralized industrialization of pork in Europe and America contributes to the global spread of Salmonella enterica”, Heng Li, Yilei Wu, Dan Feng, Quangui Jiang, Shengkai Li, Jie Rong, Ling Zhong, Ulrich Methner, Laura Baxter, Sascha Ott, Daniel Falush, Zhenpeng Li, Xiangyu Deng, Xin Lu, Yi Ren, Biao Kan, Zhemin Zhou, Nature Food, 2024

 

"A distinct, high-affinity, alkaline phosphatase facilitates occupation of P-depleted environments by marine picocyanobacteriai", Alberto Torcello-Requena, Andrew R. J. Murphy, Ian D. E. A. Lidbury, Frances D. Pitt, Richard Stark, Andrew D. Millard, Richard J. Puxty, Yin Chen, David J. Scanlan, PNAS, 2024

 

"Coevolutionary analysis of Pseudomonas syringae–phage interactions to help with rational design of phage treatments", Mojgan Rabiey, Emily R. Grace, Paulina Pawlos, Muscab Bihi, Haleem Ahmed, Georgina E. Hampson, Amna Al Riyami, Leena Alharbi, Rosa Sanchez-Lucas, Naina Korotania, Maria Laura Ciusa, Olivia Mosley, Michelle T. Hulin, Laura Baxter, Sabrine Dhaouadi, Diana Vinchira-Villarraga, Robert W. Jackson, Microbial Biotechnology, 2024

 

"Erysipelothrix amsterdamensis sp. nov., associated with mortalities among endangered seabirds", Jiadong Zhong, Matej Medvecky, Jérémy Tornos, Augustin Clessin , Rozenn Le Net, Hubert Gantelet , Amandine Gamble, Taya L. Forde and Thierry Boulinier, International Journal of Systematic and Evolutionary Microbiology, 2024

 

Dual RNA-seq identifies proteins and pathways required for Clostridioides difficile colonisation”, Lucy R. Frost, Richard Stark, Blessing Anonye, Ludmila R. P. Ferreira, Meera Unnikrishnan, mSystems, 2023

 

"Rhizobial nitrogen fixation efficiency shapes endosphere bacterial communities and Medicago truncatula host growth”, Beatriz Lagunas, Luke Richards, Chrysi Sergaki, Jamie Burgess, Alonso Javier Pardal, Rana M. F. Hussain, Bethany L. Richmond, Laura Baxter, Proyash Roy, Anastasia Pakidi, Gina Stovold, Saúl Vázquez, Sascha Ott, Patrick Schäfer and Miriam L. Gifford, Microbiome, 2023

 

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations“, Mark Achtman, Zhemin Zhou, Jane Charlesworth, Laura Baxter, Philosophical Transactions of the Royal Society B, 2022

 

The immune landscape of SARS-CoV-2-associated Multisystem Inflammatory Syndrome in Children (MIS-C) from acute disease to recovery”, Eleni Syrimi, Eanna Fennell, Alex Richter, Pavle Vrljicak, Richard Stark, Sascha Ott, Paul G Murray, Eslam Al-Abadi, Ashish Chikermane, Pamela Dawson, Scott Hackett, Deepthi Jyothish, Hari Krishnan Kanthimathinathan, Sean Monaghan, Prasad Nagakumar, Barnaby R Scholefield, Steven Welch, Naeem Khan, Sian Faustini, Kate Davies, Wioleta M Zelek, Pamela Kearns, Graham S Taylor, iScience, 2021

 

"TiAl6V4 Alloy Surface Modifications and Their Impact on Biofilm Development of S. aureus and S. epidermidis", A. H. Paulitsch-Fuchs, L. Wolrab, N. Eck, N. P. Dyer, B. Bödendorfer, B. Lohberger, Journal of Functional Biomaterials, 2021

 

Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC”, Magdalena Karlikowska, Albel Singh, Apoorva Bhatt, Sascha Ott, Andrew R Bottrill, Gurdyal S Besra, Elizabeth Fullam, The Cell Surface, 2021

 

An integrated national scale SARS-CoV-2 genomic surveillance network”, The COVID-19 Genomics UK (COG-UK) consortium, Lancet Microbe, 2020