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Software

We can deploy web-based databases and tools for you, see some examples below.

Databases and web-tools hosted by us

EnteroBase:
an integrated software environment supporting the identification of global population structures within several bacterial genera that include pathogens.
PhytoBacExplorer:
explore phylogenomics of phytobacteria. This system is based on EnteroBase software and hardware. As part of an ongoing funded project, tools used by the phytobacterial community are going to be added to PhytoBacExplorer.
WaspAtlas: a Nasonia vitripennis gene database hosted in collaboration with University of Haifa.
MEME-LaB: MEME Launcher and Browser. Provides an interface to run MEME on a range of gene clusters and browse the resulting motifs.
EARS: Evolutionary Analysis of Regulatory Sequences. Detects alignment-conserved regions in promoter sequences.
Paired Motif Enrichment Tool (PMET): A tool for finding enrichment of pairs of transcription factor binding motifs within a set of sequences.

Software provided for local use

AlphaFold:
Local installation of AlphaFold to predict a protein’s 3D structure from its amino acid sequence.