Functional Phylogenetic Gaussian Process Regression
What is an efficient way to project functional data to a lower dimensional subspace? IPCA.R
Assuming a real-valued trait is measured across the tips/leaves of a phylogeny, and given a Gaussian Process prior distribution for its values through the phylogeny,
- how can one infer its posterior distribution at internal nodes of the phylogeny? ANR.R
- how can one infer the hyperparameters of the prior distribution? HPE.R (you'll also need this file with additional functions HPE_functions.R )
The necessary background to this code is provided in the report paper "Ancestral Inference from Functional Data: Statistical Methods and Numerical Examples", arXiv:1208.0628. A poster showcasing this work can be accessed here.