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VeGIN Data

Brassica Variants Browser

Variant calls from RNAseq analysis of Brassica lines for the VeGIN project. The displayed data includes samples from both root and leaf, so an individual is usually represented twice.

Search for gene names, eg. "Bo1g001100", or use genomic coordinates, eg. "C4:19277733-19282838".

Drag the variants track left and right to move along the chromosome. Zoom in and out with the [+] and [-] buttons. Select variants to see genotypes and sample details.

IGV browser citation: Briefings in Bioinformatics 14, 178-192 (2013).