Rob Sunnucks

Projects

• What is the value of entomological monitoring in tsetse control? Modelling the use of tsetse data for adaptive management of vector control in new regions.
  • PhD work on how monitoring the tsetse population can prove valuable in assisting elimination efforts of gambiense Human African Trypanosomiasis (gHAT), otherwise known as sleeping sickness.
  • Supervisors: Prof Kat Rock and Dr Emma Davis. External partners: National Sleeping Sickness Control Programme in DR Congo (PNLTHA-DRC) and Dr Inaki Tirados at LSTM.
  • Working as a part of the HAT Modelling and Economic Predictions for Policy (HAT MEPP) team.
• Adaptive Management for Strategies against NTDs

  • MSc Individual Project - Supervisors: Prof Kat Rock and Dr Emma Davis

  • Continuing into PhD work
• Determining the phase transition for human-to-human transmissible and non-human to-human transmissible influenza strains
  • MSc Group Project - Supervisors: Prof Matt Keeling and Dr Ed Hill
• The dynamics of fast-start motions observed in fish
  • MMath research project - Supervisor: Dr Shreyas Mandre

Publications

Methods for Reproducible Comparison of Strategies in Stochastic ModellingLink opens in a new window - Sunnucks, Davis and Rock (preprint)

Stochastic simulations are often used to model real-world phenomena such as infectious disease dynamics. In this modelling, differing strategies are often compared to one another by comparing the model outputs each strategy results in. Hash-based matching, pseudo-random number generation is an approach for stochastic simulations that was originally developed by Pearson and Abbott in the hashprng package to overcome challenges with comparing model simulations in a way that considers the dependency between model outputs. We demonstrate how methods based on this approach grant considerable benefit when comparing different strategies, and show when each of our three proposed methods ought to be used. We illustrate our methods with two epidemiological models: one simple model of a vaccine-preventable infection and one complex model of African sleeping sickness, which can be controlled through multiple interventions. We show how our Bernoulli hashing method works very well for simple models, and a variation of it can be used for more complex models in certain cases. Additionally, we discuss the properties of our methods for considering counterfactual scenarios and note that, compared to other attempts to obtain perfect counterfactuals, they demonstrate advantages in computational complexity and their application to a wider variety of models.

Introducing a framework for within-host dynamics and mutations modelling of H5N1 influenza infection in humansLink opens in a new window - Higgins, Looker, Sunnucks, Carruthers, Finnie, Keeling and Hill

Avian influenza A(H5N1) poses a public health risk due to its pandemic potential should the virus mutate to become human-to-human transmissible. To date, reported influenza A(H5N1) human cases have typically occurred in the lower respiratory tract with a high case fatality rate. There is prior evidence of some influenza A(H5N1) strains being a small number of amino acid mutations away from achieving droplet transmissibility, possibly allowing them to be spread between humans. We present a mechanistic within-host influenza A(H5N1) infection model, novel for its explicit consideration of the biological differences between the upper and lower respiratory tracts. We then estimate a distribution of viral lifespans and effective replication rates in human H5N1 influenza cases. By combining our within-host model with a viral mutation model, we determine the probability of an infected individual generating a droplet transmissible strain of influenza A(H5N1) through mutation. For three mutations, we found a peak probability of approximately 10^-3 that a human case of H5N1 influenza produces at least one virion during the infectious period. Our findings provide insights into the risk of differing infectious pathways of influenza A(H5N1) (namely avian–human versus avian–mammal–human routes), demonstrating the three-mutation pathway being a cause of concern in human cases.

Teaching Responsibilities

2025/26

• Graduate Teaching Assistant for MA265 - Methods of Mathematical Modelling 3
• Supervisor for a group of first-year Mathematics students

2024/25

• Supervisor for two groups of first-year Mathematics students
• Graduate Teaching Assistant for MA265 - Methods of Mathematical Modelling 3

Education

• PhD (ongoing) in Mathematics of Systems
  • MathSys CDT, University of Warwick, 2024-present
• MSc in Mathematics of Systems
  • MathSys CDT, University of Warwick, 2023-2024
• MMath in Mathematics
  • University of Warwick, 2019-2023