Mark Achtman

Job Title

Professor

Department

WMS - Biomedical Sciences

Phone

024 7657 5592

M.Achtman@warwick.ac.uk

Web Link

Achtman Lab

Research Interests

Epidemiological and sequence data are used to evaluate the evolution and population structure of pathogenic bacteria, including Helicobacter pylori , Salmonella enterica , Escherichia coli and Yersinia pestis . Sequences of housekeeping genes from global collections have been used to define multi-locus sequence types for epidemiological purposes. Sequence relationships have also been used to determine population genetic structures. We are currently developing fine typing for species such as Y. pestis whose housekeeping genes are highly uniform. Novel mathemical approaches are being developed to extract information content from extensive sequence-based datasets. Bayesian approaches have been applied to the population structure of H. pylori and are being extended to other organisms in order to provide algorithms that can be used in general. A major goal is to deduce the phylogenetic structure and ancestry of bacterial species that experience frequent recombination. Molecular epidemiology has been performed on a variety of organisms in an attempt to reveal the microevolution of these bacteria over periods of decades to centuries. Formerly, epidemic Neisseria meningitides were investigated extensively but a large proportion of current efforts are addressed to the global population structure of H. pylori.

'Achtman, Mark, 'Zhou, Zhemin, 'Charlesworth, Jane, 'Baxter, Laura, 2022. 'EnteroBase : Hierarchical clustering of 100,000s of bacterial genomes into species/sub-species and populations. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1861)
Achtman, Mark, Van den Broeck, Frederik, Cooper, Kerry K., Lemey, Philippe, Parker, Craig T., Zhou, Zhemin, 2021. Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature. PLoS Genetics, 17 (9)
Zhou, Zhemin, Charlesworth, Jane, Achtman, Mark, Kelso, Janet, 2021. HierCC : a multi-level clustering scheme for population assignments based on core genome MLST. Bioinformatics, 37 (20), pp. 3645-3646
Luhmann, Nina, Holley, Guillaume, Achtman, Mark, 2021. BlastFrost : fast querying of 100,000s of bacterial genomes in Bifrost graphs. Genome Biology, 22
Achtman, Mark, Zhou, Zhemin, 2020. Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus. Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1812)
Zhou, Zhemin, Charlesworth, Jane, Achtman, Mark, 2020. Accurate reconstruction of bacterial pan- and core genomes with PEPPAN. Genome Research, 30, pp. 1667-1679
Frentrup, Martinique, Zhou, Zhemin, Steglich, Matthias, Meier-Kolthoff, Jan P., Göker, Markus, Riedel, Thomas, Bunk, Boyke, Spröer, Cathrin, Overmann, Jörg, Blaschitz, Marion, Indra, Alexander, von Müller, Lutz, Kohl, Thomas A., Niemann, Stefan, Seyboldt, Christian, Klawonn, Frank, Kumar, Nitin, Lawley, Trevor D., García-Fernández, Sergio, Cantón, Rafael et al (Select to open full list), 2020.

All authors for A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

Frentrup, Martinique, Zhou, Zhemin, Steglich, Matthias, Meier-Kolthoff, Jan P., Göker, Markus, Riedel, Thomas, Bunk, Boyke, Spröer, Cathrin, Overmann, Jörg, Blaschitz, Marion, Indra, Alexander, von Müller, Lutz, Kohl, Thomas A., Niemann, Stefan, Seyboldt, Christian, Klawonn, Frank, Kumar, Nitin, Lawley, Trevor D., García-Fernández, Sergio, Cantón, Rafael, del Campo, Rosa, Zimmermann, Ortrud, Groß, Uwe, Achtman, Mark, Nübel, Ulrich

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics. Microbial Genomics, 6 (8)
Zhou, Zhemin, Alikhan, Nabil-Fareed, Mohamed, Khaled, Fan, Yulei, Achtman, Mark, Tyne, William, 2019. The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny and Escherichia core genomic diversity. Genome Research
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André, Achtman, Mark, 2018. GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (9), pp. 1395-1404
Alikhan, Nabil-Fareed, Zhou, Zhemin, Sergeant, Martin J., Achtman, Mark, 2018. A genomic overview of the population structure of Salmonella. PLoS Genetics, 14 (4)
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P., Achtman, Mark, 2018. Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive Para C lineage for millennia. Current Biology, 28 (15), pp. 2420-2428
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André, Achtman, Mark, 2018. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (10), pp. 1395-1404
Achtman, Mark, 2016. How old are bacterial pathogens?. Proceeding of the Royal Society B, 286 (1836)
Connor, Thomas R., Owen, Sian V., Langridge, Gemma, Connell, Steve, Nair, Satheesh, Reuter, Sandra, Dallman, Timothy J., Corander, Jukka, Tabing, Kristine C., Le Hello, Simon, Fookes, Maria, Doublet, Benoît, Zhou, Zhemin, Feltwell, Theresa, Ellington, Matthew J., Herrera, Silvia, Gilmour, Matthew, Cloeckaert, Axel, Achtman, Mark, Parkhill, Julian et al (Select to open full list), 2016.

All authors for What's in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of salmonella enterica serotype paratyphi B

Connor, Thomas R., Owen, Sian V., Langridge, Gemma, Connell, Steve, Nair, Satheesh, Reuter, Sandra, Dallman, Timothy J., Corander, Jukka, Tabing, Kristine C., Le Hello, Simon, Fookes, Maria, Doublet, Benoît, Zhou, Zhemin, Feltwell, Theresa, Ellington, Matthew J., Herrera, Silvia, Gilmour, Matthew, Cloeckaert, Axel, Achtman, Mark, Parkhill, Julian, Wain, John, De Pinna, Elizabeth, Weill, François-Xavier, Peters, Tansy, Thomson, Nick

What's in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of salmonella enterica serotype paratyphi B. mBio, 7 (4), pp. e00527-16
Kay, Gemma L., Sergeant, Martin J., Zhou, Zhemin, Chan, Jacqueline, Millard, Andrew D., Quick, Joshua, Szikossy, Ildikó, Pap, Ildiko´, Spigelman, Mark, Loman, Nicholas J., Achtman, Mark, Donoghue, Helen D., Pallen, Mark J., 2015. Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nature Communications, 6, pp. 1-9
Didelot, Xavier, Pang, Bo, Zhou, Zhemin, McCann, Angela, Ni, Peixiang, Li, Dongfang, Achtman, Mark, Kan, Biao, 2015. The role of China in the global spread of the current cholera pandemic. PLoS Genetics, 11 (3), pp. 1-14
Achtman, Mark, Zhou, Zhemin, Didelot, Xavier, 2015. Formal comment to Pettengill : the time to most recent common ancestor does not (usually) approximate the date of divergence. PLoS One, 10 (8), pp. 1-11
Malik, Harmit S., Olbermann, Patrick, Josenhans, Christine, Moodley, Yoshan, Uhr, Markus, Stamer, Christiana, Vauterin, Marc, Suerbaum, Sebastian, Achtman, Mark, Linz, Bodo, 2014. Correction : A global overview of the genetic and functional diversity in the helicobacter pylori cag pathogenicity island. PLoS Genetics, 10 (1)
Haase, Jana K., Didelot, Xavier, Lecuit, Marc, Korkeala, Hannu, Achtman, Mark, 2014. The ubiquitous nature of Listeria monocytogenesclones : a large-scale Multilocus Sequence Typing study. Environmental Microbiology, 16 (2), pp. 405-416
Reuter, S., Connor, T. R., Barquist, L., Walker, D., Feltwell, T., Harris, S. R., Fookes, M., Hall, M. E., Petty, N. K., Fuchs, T. M., Corander, J., Dufour, M., Ringwood, T., Savin, C., Bouchier, C., Martin, L., Miettinen, M., Shubin, M., Riehm, J. M., Laukkanen-Ninios, R. et al (Select to open full list), 2014.

All authors for Parallel independent evolution of pathogenicity within the genus Yersinia

Reuter, S., Connor, T. R., Barquist, L., Walker, D., Feltwell, T., Harris, S. R., Fookes, M., Hall, M. E., Petty, N. K., Fuchs, T. M., Corander, J., Dufour, M., Ringwood, T., Savin, C., Bouchier, C., Martin, L., Miettinen, M., Shubin, M., Riehm, J. M., Laukkanen-Ninios, R., Sihvonen, L. M., Siitonen, A., Skurnik, M., Falcao, J. P., Fukushima, H., Scholz, H. C., Prentice, M. B., Wren, B. W., Parkhill, J., Carniel, E., Achtman, Mark, McNally, A., Thomson, N. R.

Parallel independent evolution of pathogenicity within the genus Yersinia. Proceedings of the National Academy of Sciences of the United States of America
Achtman, Mark, Zhou, Zhemin, 2014. Distinct genealogies for plasmids and chromosome. PLoS Genetics, 10 (12)
Haase, Jana K., Didelot, Xavier, Lecuit, Marc, Korkeala, Hannu, Achtman, Mark, 2014. The ubiquitous nature of listeria monocytogenesclones : a large-scale multilocus sequence typing study. Environmental Microbiology, 16 (2), pp. 405-416
Cui, Yujun, Yang, Xianwei, Xiao, Xiao, Anisimov, Andrey P., Li, Dongfang, Yan, Yanfeng, Zhou, Dongsheng, Rajerison, Minoarisoa, Carniel, Elisabeth, Achtman, Mark, Yang, Ruifu, Song, Yajun, 2014. Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries. Infection, Genetics and Evolution, 26, pp. 172-179
Zhou, Zhemin, McCann, A., Weill, F. -X., Blin, C., Nair, S., Wain, J., Dougan, G., Achtman, Mark, 2014. Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever. Proceedings of the National Academy of Sciences of the United States of America, 111 (33), pp. 12199-12204
Nell, Sandra, Eibach, Daniel, Montano, Valeria, Maady, Ayas, Nkwescheu, Armand, Siri, Jose, Elamin, Wael F., Falush, Daniel, Linz, Bodo, Achtman, Mark, Moodley, Yoshan, Suerbaum, Sebastian, 2013. Recent acquisition of Helicobacter pylori by Baka Pygmies. PLoS Genetics, 9 (9)
Achtman, Mark, Hale, James, Murphy, Ronan A., Boyd, E. Fidelma, Porwollik, Steffen, 2013. Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization. Infection, Genetics and Evolution, 16, pp. 314-325
Zhou, Zhemin, McCann, Angela, Litrup, Eva, Murphy, Ronan, Cormican, Martin, Fanning, Seamus, Brown, Derek, Guttman, David S., Brisse, Sylvain, Achtman, Mark, 2013. Neutral genomic microevolution of a recently emerged pathogen, salmonella enterica serovar agona. PLoS Genetics, 9 (4)
Holden, M. T. G., Hsu, L.-Y., Kurt, K., Weinert, L. A., Mather, A. E., Harris, S. R., Strommenger, B., Layer, F., Witte, W., de Lencastre, H., Skov, R., Westh, H., Zemlickova, H., Coombs, G., Kearns, A. M., Hill, R. L. R., Edgeworth, J., Gould, I., Gant, V., Cooke, J. et al (Select to open full list), 2013.

All authors for A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

Holden, M. T. G., Hsu, L.-Y., Kurt, K., Weinert, L. A., Mather, A. E., Harris, S. R., Strommenger, B., Layer, F., Witte, W., de Lencastre, H., Skov, R., Westh, H., Zemlickova, H., Coombs, G., Kearns, A. M., Hill, R. L. R., Edgeworth, J., Gould, I., Gant, V., Cooke, J., Edwards, G. F., McAdam, P. R., Templeton, K. E., McCann, A., Zhou, Z., Castillo-Ramirez, S., Feil, E. J., Hudson, L. O., Enright, M. C., Balloux, F., Aanensen, D. M., Spratt, B. G., Fitzgerald, J. R., Parkhill, J., Achtman, Mark, Bentley, S. D., Nubel, U.

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Research, 23 (4), pp. 653-664
Cui, Y., Yu, C., Yan, Y., Li, D., Li, Y., Jombart, T., Weinert, L. A., Wang, Z., Guo, Z., Xu, L., Zhang, Y., Zheng, H., Qin, N., Xiao, X., Wu, M., Wang, X., Zhou, D., Qi, Z., Du, Z., Wu, H. et al (Select to open full list), 2013.

All authors for Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

Cui, Y., Yu, C., Yan, Y., Li, D., Li, Y., Jombart, T., Weinert, L. A., Wang, Z., Guo, Z., Xu, L., Zhang, Y., Zheng, H., Qin, N., Xiao, X., Wu, M., Wang, X., Zhou, D., Qi, Z., Du, Z., Wu, H., Yang, X., Cao, H., Wang, H., Wang, J., Yao, S., Rakin, A., Li, Y., Falush, D., Balloux, F., Achtman, Mark, Song, Y., Wang, J., Yang, R.

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America, 110 (2), pp. 577-582
Shepard, S. M., Danzeisen, J. L., Isaacson, R. E., Seemann, T., Achtman, Mark, Johnson, T. J., 2012. Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic escherichia coli. Journal of Bacteriology, 194 (2), pp. 395-405
Clark, G., Paszkiewicz, K., Hale, J., Weston, V., Constantinidou, Chrystala, Penn, C., Achtman, Mark, McNally, A., 2012. Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections. Journal of Antimicrobial Chemotherapy, 67 (4), pp. 868-877
Haase, J. K., Brown, D. J., Weill, F.-X., Mather, H., Foster, G., Brisse, S., Wain, J., Achtman, Mark, 2012. Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises. Applied and Environmental Microbiology, 78 (24), pp. 8829-8833
Haase, Jana K., Brown, D. J., Weill, F.-X., Mather, H., Foster, G., Brisse, S., Wain, J., Achtman, Mark, 2012. Population genetic structure of 4,12:a :- salmonella enterica strains from harbor porpoises. Applied and Environmental Microbiology, 78 (24), pp. 8829-8833
Moodley, Yoshan, Linz, Bodo, Bond, Robert P., Nieuwoudt, Martin, Soodyall, Himla, Schlebusch, Carina M., Bernhöft, Steffi, Hale, J. (James), Suerbaum, Sebastian, Mugisha, Lawrence, Van der Merwe, Schalk W., Achtman, Mark, 2012. Age of the association between Helicobacter pylori and man. PLoS Pathogens, 8 (5)
Achtman, Mark, 2012. Insights from genomic comparisons of genetically monomorphic bacterial pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, 367 (1590), pp. 860-867
Fabre, Laëtitia, Zhang, Jian, Guigon, Ghislaine, Le Hello, Simon, Guibert, Véronique, Accou-Demartin, Marie, de Romans, Saïana, Lim, Catherine, Roux, Chrystelle, Passet, Virginie, Diancourt, Laure, Guibourdenche, Martine, Issenhuth-Jeanjean, Sylvie, Achtman, Mark, Brisse, Sylvain, Sola, Christophe, Weill, François-Xavier, 2012. CRISPR typing and subtyping for improved laboratory surveillance of salmonella infections. PLoS One, 7 (5)
Achtman, Mark, Wain, John, Weill, François-Xavier, Nair, Satheesh, Zhou, Zhemin, Sangal, Vartul, Krauland, Mary G., Hale, James L., Harbottle, Heather, Uesbeck, Alexandra, Dougan, Gordon, Harrison, Lee H., Brisse, Sylvain, 2012. Multilocus sequence typing as a replacement for serotyping in salmonella enterica. PLoS Pathogens, 8 (6)
Watson, Michael, O'Farrell, Brian, Haase, Jana K., Velayudhan, Vimalkumar, Murphy, Ronan A., Achtman, Mark, 2012. Transforming microbial genotyping : a robotic pipeline for genotyping bacterial strains. PLoS ONE, 7 (10)
Croxall, G., Hale, J., Weston, V., Manning, G., Cheetham, P., Achtman, Mark, McNally, A., 2011. Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings. Journal of Antimicrobial Chemotherapy, 66 (11), pp. 2501-2508
Accou-Demartin, Marie, Gaborieau, Valérie, Song, Yajun, Roumagnac, Philippe, Marchou, Bruno, Achtman, Mark, Weill, François-Xavier, 2011. Salmonella enterica serotype typhi with nonclassical quinolone resistance phenotype. Emerging Infectious Diseases, 17 (6)
Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel, Donnelly, Peter, 2011. Recombination and population structure in salmonella enterica. PLoS Genetics, 7 (7)
Laukkanen-Ninios, Riikka, Didelot, Xavier, Jolley, Keith A., Morelli, Giovanna, Sangal, Vartul, Kristo, Paula, Brehony, Carina, Imori, Priscilla F. M., Fukushima, Hiroshi, Siitonen, Anja, Tseneva, Galina, Voskressenskaya, Ekaterina, Falcao, Juliana P., Korkeala, Hannu, Maiden, Martin C. J., Mazzoni, Camila, Carniel, Elisabeth, Skurnik, Mikael, Achtman, Mark, 2011. Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing. Environmental Microbiology, 13 (12), pp. 3114-3127
Achtman, Mark, 2011. A broad brush, global overview of bacterial sexuality. PLoS Genetics, 7 (8)
Haase, Jana K., Murphy, Ronan A., Choudhury, Kingshuk Roy, Achtman, Mark, 2011. Revival of Seeliger's historical ?Special Listeria Culture Collection'. Environmental Microbiology, 13 (12), pp. 3163-3171
Vogler, Amy J., Chan, Fabien, Wagner, David M., Roumagnac, Philippe, Lee, Judy, Nera, Roxanne, Eppinger, Mark, Ravel, Jacques, Rahalison, Lila, Rasoamanana, Bruno W., Beckstrom-Sternberg, Stephen M., Achtman, Mark, Chanteau, Suzanne, Keim, Paul, 2011. Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Neglected Tropical Diseases, 5 (9)
Morelli, Giovanna, Song, Yajun, Mazzoni, Camila J., Eppinger, Mark, Roumagnac, Philippe, Wagner, David M., Feldkamp, Mirjam, Kusecek, Barica, Vogler, Amy J., Li, Yanjun, Cui, Yujun, Thomson, Nicholas R., Jombart, Thibaut, Leblois, Raphael, Lichtner, Peter, Rahalison, Lila, Petersen, Jeannine M., Balloux, Francois, Keim, Paul, Wirth, Thierry et al (Select to open full list), 2010.

All authors for Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Morelli, Giovanna, Song, Yajun, Mazzoni, Camila J., Eppinger, Mark, Roumagnac, Philippe, Wagner, David M., Feldkamp, Mirjam, Kusecek, Barica, Vogler, Amy J., Li, Yanjun, Cui, Yujun, Thomson, Nicholas R., Jombart, Thibaut, Leblois, Raphael, Lichtner, Peter, Rahalison, Lila, Petersen, Jeannine M., Balloux, Francois, Keim, Paul, Wirth, Thierry, Ravel, Jacques, Yang, Ruifu, Carniel, Elisabeth, Achtman, Mark

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics, 42 (12), pp. 1140-1143
Malik, Harmit S., Olbermann, Patrick, Josenhans, Christine, Moodley, Yoshan, Uhr, Markus, Stamer, Christiana, Vauterin, Marc, Suerbaum, Sebastian, Achtman, Mark, Linz, Bodo, 2010. A global overview of the genetic and functional diversity in the helicobacter pylori cag pathogenicity island. PLoS Genetics, 6 (8)
Morelli, Giovanna, Didelot, Xavier, Kusecek, Barica, Schwarz, Sandra, Bahlawane, Christelle, Falush, Daniel, Suerbaum, Sebastian, Achtman, Mark, 2010. Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PL o S Genetics, Vol.6 (No.7)
Latifi-Navid, Saeid, Ghorashi, Seyed Ali, Siavoshi, Farideh, Linz, Bodo, Massarrat, Sadegh, Khegay, Tanya, Salmanian, Ali-Hatef, Shayesteh, Ali Akbar, Masoodi, Mohsen, Ghanadi, Koroush, Ganji, Azita, Suerbaum, Sebastian, Achtman, Mark, Malekzadeh, Reza, Falush, Daniel, 2010. Ethnic and geographic differentiation of helicobacter pylori within Iran. PLoS One, 5 (3)
Falush, D., Torpdahl, M., Didelot, Xavier, Conrad, D. F., Wilson, D. J., Achtman, Mark, 2006. Mismatch induced speciation in Salmonella : model and data. Philosophical Transactions of the Royal Society B: Biological Sciences, 361 (1475), pp. 2045-2053
Didelot, Xavier, Achtman, Mark, Parkhill, J., Thomson, N. R., Falush, D., 2006. A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes : convergence or divergence by homologous recombination?. Genome Research, 17 (1), pp. 61-68

Achtman, Mark, 1976. The mating phenomenon in Escherichia Coli. In Bradshaw, Ralph (ed.), Surface Membrane Receptors, Springer US, pp. 99-108

Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2018. Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes. RECOMB 2018 : International Conference on Research in Computational Molecular Biology, Paris, 21-24 Apr 2018, Published in Lecture Notes in Computer Science, pp. 225-240
Nell, S., Eibach, D., Montano, V., Nkwesheu, A., Maady, A., Linz, B., Moodley, Y., Achtman, Mark, Suerbaum, S., 2012. Population structure of Helicobacter pylori among ethnic groups in Cameroon. 64. Jahrestagung der Deutschen Gesellschaft fur Hygiene und Mikrobiologie (DGHM), Published in International Journal of Medical Microbiology

'Achtman, M., 'Zhou, Zhemin, 'Charlesworth, Jane, 'Baxter, Laura, 2022. 'Data for EnteroBase: Hierarchical clustering of 100,000 s of bacterial genomes into species/sub-species and populations. Warwick Medical School
'Zhou, Zhemin, 'Alikhan, Nabil-Fareed, 'Mohamed, Khaled, 'Fan, Yulei, 'Achtman, Mark, 2019. 'Data for The user?s guide to comparative genomics with EnteroBase. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 6. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 8. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 4. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 4. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: workflow. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 7. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 4. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 3. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 5. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Archive package of additional figures, tables and data. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 1. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 1. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 2. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 3. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 4. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 5. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 6. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 7. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 8. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 2. University of Warwick, Warwick Medical School
Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2017. Accurate reconstruction of microbial strains using representative reference genomes. biorxiv, Cold Spring Harbour
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P., Achtman, Mark, 2017. Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. biorxiv, Cold Spring Harbour
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Green, Monica H., Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Thomas, M., Gilbert, P. et al (Select to open full list), 2017.

All authors for Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Green, Monica H., Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Thomas, M., Gilbert, P., Achtman, Mark

Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Warwick Medical School, University of Warwick
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Catia, Francisco, Alexandre P., Carrico, Joao Andre, Achtman, Mark, 2017. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. biorxiv, Cold Spring Harbour
Wain, John, Achtman, Mark, 2013. Salmonella detection assay. Patentscope
Morelli, Giovanna, Song, Yajun, Mazzoni, Camila J., Eppinger, Mark, Roumagnac, Philippe, Wagner, David M., Feldkamp, Mirjam, Kusecek, Barica, Vogler, Amy J., Li, Yanjun, Cui, Yujun, Thomson, Nicholas R., Jombart, Thibaut, Leblois, Raphael, Lichtner, Peter, Rahalison, Lila, Petersen, Jeannine M., Balloux, Francois, Keim, Paul, Wirth, Thierry et al (Select to open full list), 2010.

All authors for Supplementary information to support : 'Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity'

Morelli, Giovanna, Song, Yajun, Mazzoni, Camila J., Eppinger, Mark, Roumagnac, Philippe, Wagner, David M., Feldkamp, Mirjam, Kusecek, Barica, Vogler, Amy J., Li, Yanjun, Cui, Yujun, Thomson, Nicholas R., Jombart, Thibaut, Leblois, Raphael, Lichtner, Peter, Rahalison, Lila, Petersen, Jeannine M., Balloux, Francois, Keim, Paul, Wirth, Thierry, Ravel, Jacques, Yang, Ruifu, Carniel, Elisabeth, Achtman, Mark

Supplementary information to support : 'Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity'. Nature Genetics, Nature Publishing Group, pp. 1140-1143

Title	Funder	Award start	Award end
Deep evolutionary history of bacterial pathogens: Supplement for 48452 due to Covid-19.	Wellcome Trust	01 Sept 2021	28 Feb 2022
Wellcome Trust Investigator Award - Deep evolutionary history of bacterial pathogens	Wellcome Trust	01 Sept 2016	31 Aug 2021
THE MRC CONSORTIUM FOR MEDICAL MICROBIAL BIOINFORMATICS	MRC	01 Apr 2014	01 Oct 2020
Pettenkofer Prize	Max von Pettenkofer-Institute for Hygiene and Medical Microbiology	07 Dec 2018	06 Dec 2019
BBSRC / Achten / EnteroBase: A Powerful, User-Friendly Online Resource for Analyzing and Visualizing Genomic Variation within Escherichia coli and Salmonella enterica	BBSRC	01 Apr 2014	15 Oct 2019