Research Interests
Comparative genomics methods, comparative assembly, ancient DNA, ancestral reconstruction
Achtman Lab website.
- 'Acman, Mislav, 'Wang, Ruobing, 'van Dorp, Lucy, 'Shaw, Liam P., 'Wang, Qi, 'Luhmann, Nina, 'Yin, Yuyao, 'Sun, Shijun, 'Chen, Hongbin, 'Wang, Hui, 'Balloux, Francois, 2022. 'Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM. Nature Communications, 13 (1)
- Luhmann, Nina, Holley, Guillaume, Achtman, Mark, 2021. BlastFrost : fast querying of 100,000s of bacterial genomes in Bifrost graphs. Genome Biology, 22
- Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André, Achtman, Mark, 2018. GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (9), pp. 1395-1404
- Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André, Achtman, Mark, 2018. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (10), pp. 1395-1404
- Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2018. Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes. RECOMB 2018 : International Conference on Research in Computational Molecular Biology, Paris, 21-24 Apr 2018, Published in Lecture Notes in Computer Science, pp. 225-240
- Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2017. Accurate reconstruction of microbial strains using representative reference genomes. biorxiv, Cold Spring Harbour
- Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Catia, Francisco, Alexandre P., Carrico, Joao Andre, Achtman, Mark, 2017. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. biorxiv, Cold Spring Harbour