Nabil-Fareed Alikhan

Job Title

Senior Research Fellow

Department

WMS - Microbiology and Infection

Phone

024 7655 1921

N-F.Alikhan@warwick.ac.uk_FORMER

Research Interests

For Alikhan's research interests visit: Achtman Lab website.

Chen, Lihong, Song, Nan, Liu, Bo, Zhang, Nan, Alikhan, Nabil-Fareed, Zhou, Zhemin, Zhou, Yanyan, Zhou, Siyu, Zheng, Dandan, Chen, Mingxing, Hapeshi, Alexia, Healey, Joseph R. J., Waterfield, Nicholas R., Yang, Jian, Yang, Guowei, 2019. Genome-wide identification and characterization of a superfamily of bacterial extracellular contractile injection systems. Cell Reports, 29 (2), pp. 511-521.e2
Zhou, Zhemin, Alikhan, Nabil-Fareed, Mohamed, Khaled, Fan, Yulei, Achtman, Mark, Tyne, William, 2019. The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny and Escherichia core genomic diversity. Genome Research
Alikhan, Nabil-Fareed, Zhou, Zhemin, Sergeant, Martin J., Achtman, Mark, 2018. A genomic overview of the population structure of Salmonella. PLoS Genetics, 14 (4)
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P., Achtman, Mark, 2018. Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive Para C lineage for millennia. Current Biology, 28 (15), pp. 2420-2428
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André, Achtman, Mark, 2018. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (10), pp. 1395-1404
Page, Andrew J., Alikhan, Nabil-Fareed, Carleton, Heather A., Seemann, Torsten, Keane, Jacqueline A., Katz, Lee S., 2017. Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Microbial Genomics, 3 (8)
Wailan, Alexander M., Sidjabat, Hanna E., Yam, Wan Keat, Alikhan, Nabil-Fareed, Petty, Nicola K., Sartor, Anna L., Williamson, Deborah A., Forde, Brian M., Schembri, Mark A., Beatson, Scott A., Paterson, David L., Walsh, Timothy R., Partridge, Sally R., 2016. Mechanisms involved in acquisition of blaNDM genes by IncA/C2 and IncFIIY plasmids. Antimicrobial Agents and Chemotherapy, 60 (7), pp. 4082-4088
Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nhu, Nguyen Thi Khanh, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria et al (Select to open full list), 2015.

All authors for Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition

Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nhu, Nguyen Thi Khanh, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria, Ussery, David W., Ulett, Glen C., Schembri, Mark A.

Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, 83 (5), pp. 1749-1764
Beatson, S. A., das Gracas de Luna, M., Bachmann, N. L., Alikhan, Nabil-Fareed, Hanks, K. R., Sullivan, M. J., Wee, B. A., Freitas-Almeida, A. C., dos Santos, P. A., de Melo, J. T. B., Squire, D. J. P., Cunningham, A. F., Fitzgerald, J. R., Henderson, I. R., 2011. Genome sequence of the emerging pathogen aeromonas caviae. Journal of Bacteriology, 193 (5), pp. 1286-1287
Beatson, S. A., das Gracas de Luna, M., Bachmann, N. L., Alikhan, Nabil-Fareed, Hanks, K. R., Sullivan, M. J., Wee, B. A., Freitas-Almeida, A. C., dos Santos, P. A., de Melo, J. T. B., Squire, D. J. P., Cunningham, A. F., Fitzgerald, J. R., Henderson, I. R., 2011. Genome sequence of the emerging pathogen aeromonas caviae. Journal of Bacteriology, 193 (5), pp. 1286-1287
Alikhan, Nabil-Fareed, Petty, Nicola K., Ben Zakour, Nouri L., Beatson, Scott A., 2011. BLAST Ring Image Generator (BRIG) : simple prokaryote genome comparisons. BMC Genomics, 12 (1)

Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2018. Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes. RECOMB 2018 : International Conference on Research in Computational Molecular Biology, Paris, 21-24 Apr 2018, Published in Lecture Notes in Computer Science, pp. 225-240

'Zhou, Zhemin, 'Alikhan, Nabil-Fareed, 'Mohamed, Khaled, 'Fan, Yulei, 'Achtman, Mark, 2019. 'Data for The user?s guide to comparative genomics with EnteroBase. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 6. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 8. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 4. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 4. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 2. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 1. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 3. University of Warwick, Warwick Medical School
'Zhou, Zhemin, 'Lundstrøm, Inge, 'Dien, Alicia Tran, 'Duchêne, Sebastián, 'Alikhan, Nabil-Fareed, 'Sergeant, Martin J., 'Langridge, Gemma, 'Fotakis, Anna K., 'Nair, Satheesh, 'Stenøien, Hans K., 'Hamre, Stian S., 'Casjens, Sherwood, 'Quince, Christopher, 'Christophersen, Axel, 'Thomson, Nicholas R., 'Weill, François-Xavier, 'Ho, Simon, 'Gilbert, M. Thomas P., 'Achtman, Mark, 2018. 'Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: workflow. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 7. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 4. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 3. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 5. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Archive package of additional figures, tables and data. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 1. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 1. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 2. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 3. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 4. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 5. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 6. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 7. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 8. University of Warwick, Warwick Medical School
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher, Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P., Achtman, Mark, 2018. Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 2. University of Warwick, Warwick Medical School
Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher, Achtman, Mark, 2017. Accurate reconstruction of microbial strains using representative reference genomes. biorxiv, Cold Spring Harbour
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P., Achtman, Mark, 2017. Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. biorxiv, Cold Spring Harbour
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Green, Monica H., Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Thomas, M., Gilbert, P. et al (Select to open full list), 2017.

All authors for Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Green, Monica H., Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Thomas, M., Gilbert, P., Achtman, Mark

Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Warwick Medical School, University of Warwick
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Catia, Francisco, Alexandre P., Carrico, Joao Andre, Achtman, Mark, 2017. GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. biorxiv, Cold Spring Harbour
Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nhu, Nguyen Thi Khanh, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria et al (Select to open full list), 2015.

All authors for Data for Molecular analysis of asymptomatic Bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition

Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nhu, Nguyen Thi Khanh, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria, Ussery, David W., Ulett, Glen C., Schembri, Mark A., McCormick, B. A.

Data for Molecular analysis of asymptomatic Bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. University of Warwick, Warwick Medical School

Title	Funder	Award start	Award end
Wellcome Trust Investigator Award - Deep evolutionary history of bacterial pathogens	Wellcome Trust	01 Sept 2016	31 Aug 2021