Job Title
Professor
Department
Life Sciences
Phone
76528363
Web Link
Research Interests
The head of the group is Prof Dave Scanlan, Professor in Marine Microbiology in the Department.
Prof. Scanlan has over 25 years research experience and has worked at the University of Warwick since 1990 and has more than 135 refereed research publications.
The lab maintains well-established fruitful collaborations with research groups within and outside the University of Warwick, bringing research to a new level of interdisciplinary effort.
The group has several main areas of research:
- Community structure and niche adaptation mechanisms in marine cyanobacteria
- Biotic causes of cyanobacterial cell mortality focusing on viral infection and protistan grazing
- Molecular genetics of nutrient assimilation and regulation in cyanobacteria
- Elucidating the consequences of lipid remodelling in marine bacteria
- Sensing environmental stimuli in cyanobacteria
- Light regulation of gene expression in cyanobacteria and eukaryotic algae
- Microbiology and molecular ecology of eukaryotic picophytoplankton
His ongoing work with the genera Prochlorococcus and Synechococcus is leading to a much more detailed understanding of why these organisms dominate the world's oceans. This has included, and in collaboration with other European research laboratories, the formal description and complete genome sequence of a Prochlorococcus isolate, an organism with the smallest known genome for a free-living photoautotroph, as well as the comparative genomic analysis of several marine Synechococcus isolates. The latter is revealing considerable differences in gene complement between closely related genotypes, a feature likely underpinning differences in the spatial partitioning of individual genetic lineages in situ.
- 'Mausz, Michaela A., 'Airs, Ruth, 'Dixon, Joanna, 'Widdicombe, Claire, 'Tarran, Glen, 'Polimene, Luca, 'Dashfield, Sarah, 'Beale, Rachael, 'Scanlan, David J., 'Chen, Yin. 'Microbial uptake dynamics of choline and glycine betaine in coastal seawater. Limnology and Oceanography
- 'Mikhaylina, Alevtina, 'Scott, Luke, 'Scanlan, David J., 'Blindauer, Claudia A., 2022. 'A metallothionein from an open ocean cyanobacterium removes zinc from the sensor protein controlling its transcription. Journal of Inorganic Biochemistry, 230
- 'Murphy, Andrew, 'Scanlan, David J., 'Chen, Yin, 'Bending, G. D., 'Hammond, John P., 'Wellington, Elizabeth M. H., 'Lidbury, Ian, 2022. '2-Aminoethylphosphonate utilization in pseudomonas putida?BIRD-1 is controlled by multiple master regulators. Environmental Microbiology, 24 (4), pp. 1902-1917
- Lidbury, Ian, Borsetto, Chiara, Murphy, Andrew, Bottrill, Andrew R., Jones, Alexandra M., Bending, G. D., Hammond, John P., Chen, Yin, Wellington, Elizabeth M. H., Scanlan, David J., 2021. Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation. ISME Journal, 15, pp. 1040-1055
- Rihtman, Branko, Puxty, Richard John, Hapeshi, Alexia, Lee, Yan-Jiun, Zhan, Yuanchao, Michniewski, Slawomir, Waterfield, Nicholas R., Chen, Feng, Weigele, Peter, Millard, Andrew D., Scanlan, David J., Chen, Yin, 2021. A new family of globally distributed lytic roseophages with unusual deoxythymidine to deoxyuridine substitution. Current Biology, 31 (14), pp. 3199-3206.e4
- Murphy, Andrew, Scanlan, David J., Chen, Yin, Adams, Nathan B. P., Cadman, William A., Bottrill, Andrew R., Bending, G. D., Hammond, John P., Hitchcock, Andrew, Wellington, Elizabeth M. H., Lidbury, Ian D. E. A., 2021. Transporter characterisation reveals aminoethylphosphonate mineralisation as a key step in the marine phosphorus redox cycle. Nature Communications, 12 (1)
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Garczarek, Laurence, Guyet, Ulysse, Doré, Hugo, Farrant, Gregory K., Hoebeke, Mark, Brillet-Guéguen, Loraine, Bisch, Antoine, Ferrieux, Mathilde, Siltanen, Jukka, Corre, Erwan, Le Corguillé, Gildas, Ratin, Morgane, Pitt, Frances Diana, Ostrowski, Martin, Conan, Maël, Siegel, Anne, Labadie, Karine, Aury, Jean-Marc, Wincker, Patrick, Scanlan, David J. et al (Select to open full list), 2021. Cyanorak v2.1 : a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research, 49 (D1), pp. D667-D676
- Smith, Alastair F., Silvano, Eleonora, Päuker, Orsola, Guillonneau , Richard, Quareshy, Mussa, Murphy, Andrew, Mausz, Michaela A., Stirrup, Rachel, Rihtman, Branko, Aguilo Ferretjans, Maria, Brandsma, Joost, Petersen, Jörn, Scanlan, David J., Chen, Yin, 2021. A novel class of sulfur-containing aminolipids widespread in marine roseobacters. ISME Journal, 15, pp. 2440-2453
- Shropshire, Holly, Jones, Rebekah A., Aguilo-Ferretjans, María M., Scanlan, David J., Chen, Yin, 2021. Proteomics insights into the Burkholderia cenocepacia phosphorus stress response. Environmental Microbiology, 23 (9), pp. 5069-5086
- Jones, Rebekah A., Shropshire, Holly, Zhao, Caimeng, Murphy, Andrew, Lidbury, Ian, Wei, Tao, Scanlan, David J., Chen, Yin, 2021. Phosphorus stress induces the synthesis of novel glycolipids in Pseudomonas aeruginosa that confer protection against a last-resort antibiotic. ISME Journal, 15, pp. 3303-3314
- Aguilo-Ferretjans, Maria del Mar, Bosch, Rafael, Puxty, Richard J., Latva, Mira, Zadjelovic, Vinko, Chhun, Audam, Sousoni, Despoina, Polin, Marco, Scanlan, David J., Christie-Oleza, Joseph A., 2021. Pili allow dominant marine cyanobacteria to avoid sinking and evade predation. Nature Communications, 12 (1)
- Miles, Jennifer A., Egan, Joseph L., Fowler, Jake A., Machattou, Petrina, Millard, Andrew D., Perry, Christopher, Scanlan, David J., Taylor, Paul C., 2021. The evolutionary origins of peroxynitrite signalling. Biochemical and Biophysical Research Communications, 580, pp. 107-112
- 'Teng, Zhao-Jie, 'Wang, Peng, 'Chen, Xiu-Lan, 'Guillonneau, Richard, 'Li, Chun-Yang, 'Zou, Song-Bao, 'Gong, Jun, 'Xu, Kai-Wen, 'Han, Lin, 'Wang, Chao, 'Scanlan, David J., 'Chen, Yin, 'Zhang, Yu-Zhong, 2021. 'Acrylate protects a marine bacterium from grazing by a ciliate predator. Nature microbiology, 6 (11), pp. 1351-1356
- Kamennaya, Nina, Geraki, Kalotina, Scanlan, David J., Zubkov, Mikhail V., 2020. Accumulation of ambient phosphate into the periplasm of marine bacteria is proton motive force dependent. Nature Communications, 11 (1)
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Doré, Hugo, Farrant, Gregory K., Guyet, Ulysse, Haguait, Julie, Humily, Florian, Ratin, Morgane, Pitt, Frances Diana, Ostrowski, Martin, Six, Christophe, Brillet-Guéguen, Loraine, Hoebeke, Mark, Bisch, Antoine, Le Corguillé, Gildas, Corre, Erwan, Labadie, Karine, Aury, Jean-Marc, Wincker, Patrick, Choi, Dong Han, Noh, Jae Hoon, Eveillard, Damien et al (Select to open full list), 2020. Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology, 11
- Silvano, Eleonora, Yang, Mingyu, Wolterink, Mathias, Giebel, Helge-Ansgar, Simon, Meinhard, Scanlan, David J., Zhao, Yanlin, Chen, Yin, 2020. Lipidomic analysis of roseobacters of the pelagic RCA cluster and their response to phosphorus limitation. Frontiers in Microbiology, 11
- Miles, Jennifer A., Machattou, Petrina, Nevin-Jones, David, Webb, Michael E., Millard, Andrew, Scanlan, David J., Taylor, Paul C., 2019. Identification of a cyanobacterial aldehyde dehydrogenase that produces retinoic acid in vitro. Biochemical and Biophysical Research Communications, 510 (1), pp. 27-34
- MacGregor-Chatwin, C., Jackson, P. J., Sener, M., Chidgey, J. W., Hitchcock, A., Qian, P., Mayneord, G. E., Johnson, M. P., Luthey-Schulten, Z., Dickman, M. J., Scanlan, David J., Hunter, C. N., 2019. Membrane organization of photosystem I complexes in the most abundant phototroph on Earth. Nature Plants, 5 (8), pp. 879-889
- Rihtman, Branko, Bowman-Grahl, Sabine, Millard, Andrew, Corrigan, Rebecca M., Clokie, Martha R. J., Scanlan, David J., 2019. Cyanophage MazG is a pyrophosphohydrolase but unable to hydrolyse magic spot nucleotides. Environmental Microbiology Reports, 11 (3), pp. 448-445
- Michniewski, Slawomir, Redgwell, Tamsin, Grigonyte, Aurelija, Rihtman, Branko, Aguilo-Ferretjans, Maria, Christie-Oleza, Joseph, Jameson, Eleanor, Scanlan, David J., Millard, Andrew D., 2019. Riding the wave of genomics to investigate aquatic coliphage diversity and activity. Environmental Microbiology, 21 (6), pp. 2112-2128
- Smith, Alastair, Rihtman, Branko, Stirrup, Rachel, Silvano, Eleonora, Mausz, Michaela A., Scanlan, David J., Chen, Yin, 2019. Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae. The ISME Journal, 13, pp. 39-49
- Perez-Sepulveda, Blanca, Pitt, Frances Diana, N'Guyen, A. N., Ratin, M., Garczarek, L., Millard, Andrew D., Scanlan, David J., 2018. Relative stability of ploidy in a marine Synechococcus across various growth conditions. Environmental Microbiology, 10 (4), pp. 428-432
- Wei, Tao, Quareshy, Mussa, Zhang, Yu-zhong, Scanlan, David J., Chen, Yin, 2018. Manganese is essential for PlcP metallophosphoesterase activity involved in lipid 2 remodelling in abundant marine heterotrophic bacteria. Applied and Environmental Microbiology, 84, pp. e01109-18
- Puxty, Richard John, Evans, David J., Millard, Andrew D., Scanlan, David J., 2018. Energy limitation of cyanophage development : implications for marine carbon cycling. ISME Journal, 12, pp. 1273-1286
- Grébert, Théophile, Doré, Hugo, Partensky, Frédéric, Farrant, Gregory K., Boss, Emmanuel S., Picheral, Marc, Guidi, Lionel, Pesant, Stéphane, Scanlan, David J., Wincker, Patrick, Acinas, Silvia G., Kehoe, David M., Garczarek, Laurence, 2018. Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 115 (9), pp. E2010-E2019
- Sazinas, Pavelas, Redgwell, Tamsin, Rihtman, Branko, Grigonyte, Aurelija, Michniewski, Slawomir, Scanlan, David J., Hobman, Jon, Millard, Andrew, 2018. Comparative Genomics of Bacteriophage of the Genus Seuratvirus. Genome Biology and Evolution, 10 (1), pp. 72-76
- Mikhaylina, Alevtina, Ksibe, Amira Z., Scanlan, David J., Blindauer, Claudia A., 2018. Bacterial zinc uptake regulator proteins and their regulons. BIOCHEMICAL SOCIETY TRANSACTIONS, 46 (4), pp. 983-1001
- Richa, Kumari, Balestra, Cecilia, Piredda, Roberta, Benes, Vladimir, Borra, Marco, Passarelli, Augusto, Margiotta, Francesca, Saggiomo, Maria, Biffali, Elio, Sanges, Remo, Scanlan, David J., Casotti, Raffaella, 2017. Distribution, community composition and potential metabolic activity of bacterioplankton in an urbanized Mediterranean Sea coastal zone. Applied and Environmental Microbiology, 83 (17)
- Lidbury, Ian, Mausz, Michaela A., Scanlan, David J., Chen, Yin, 2017. Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. ISME Journal, 11, pp. 1592-1601
- Lidbury, Ian, Murphy, Andrew, Fraser, Tandra D., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbetts, Mark, Hammond, John P., Scanlan, David J., Wellington, E. M. H., 2017. Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation. Scientific Reports, 7 (1)
- Lidbury, Ian, Fraser, Tandra, Murphy, Andrew, Scanlan, David J., Bending, G. D. (Gary D.), Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbett, Mark, Hammond, John P., Wellington, E. M. H., 2017. The ?known' genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils.. MicrobiologyOpen
- Pittera, Justine, Jouhet, Juliette, Breton, Solène, Garczarek, Laurence, Partensky, Frédéric, Maréchal, Éric, Nguyen, Ngoc A., Doré, Hugo, Ratin, Morgane, Pitt, Frances Diana, Scanlan, David J., Six, Christophe, 2017. Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus. Environmental Microbiology, 20 (2), pp. 612-631
- Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J., Millard, Andrew D., 2017. Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28), pp. 1-17
- Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Lloyd, Matthew, Armengaud, Jean, Scanlan, David J., 2017. Nutrient recycling facilitates long-term stability of marine microbial phototroph?heterotroph interactions. Nature microbiology, 2
- Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V., Scanlan, David J., 2016. A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7
- Lidbury, Ian, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Amanda, Hammond, John P., Wellington, E. M. H., 2016. Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology, 18 (10), pp. 3535-3549
- Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J., Iudicone, Daniele, Acinas, Silvia G., Garczarek, Laurence, 2016. Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24), pp. E3365-E3374
- Helliwell, Katherine Emma, Lawrence, Andrew David, Holzer, Andre, Kudahl, Johan, Sasso, Severin, Kräutler, Bernhard, Scanlan, David J., Warren , Martin James, Smith, Alison Gail, 2016. Cyanobacteria and eukaryotic algae use different chemical variants of vitamin B12. Current Biology, 26 (8), pp. 999-1008
- Puxty, Richard J., Millard, Andrew D., Evans, David J., Scanlan, David J., 2016. Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12), pp. 1585-1589
- Sebastián, Marta, Smith, Alastair F., González, José M., Fredricks, Helen F., Van Mooy, Benjamin, Koblí?ek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., Sánchez, Pablo, Gasol, Josep M., Scanlan, David J., Chen, Yin, 2016. Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4), pp. 968-978
- Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J., Millard, Andrew D., Hantke, Klaus, 2016. Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15)
- West, Nyree J., Lepère, Cécile, Manes, Carmem-Lara de O., Catala, Philippe, Scanlan, David J., Lebaron, Philippe, 2016. Distinct spatial patterns of SAR11, SAR86, and actinobacteria diversity along a transect in the ultra-oligotrophic South Pacific ocean. Frontiers in Microbiology, 7
- Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin), Chen, Yin, 2015. Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12), pp. 5048-5062
- Christie-Oleza, Joseph Alexander, Armengaud, Jean, Guerin, Philippe, Scanlan, David J., 2015. Functional distinctness in the exoproteomes of marine Synechococcus. Environmental Microbiology, 17 (10), pp. 3781-3794
- Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J., Clokie, Martha R. J., 2015. Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11), pp. 4239-4252
- Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J., Clokie, Martha R. J., 2015. Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11), pp. 4239-4252
- Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V., Scanlan, David J., 2015. In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi?. Environmental Microbiology Reports, 8 (4), pp. 445-451
- Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V., Scanlan, David J., 2015. In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi?. Environmental Microbiology Reports, 8 (4), pp. 445-451
- Evans, Claire, Gómez-Pereira, Paola R., Martin, Adrian P., Scanlan, David J., Zubkov, Mikhail V., 2015. Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean. Progress in Oceanography, 135, pp. 139-145
- Christie-Oleza, Joseph Alexander, Scanlan, David J., Armengaud, Jean, 2015. ?You produce while I clean up?, a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics, 15 (20), pp. 3454-3462
- Lea-Smith, David J., Biller, Steven J., Davey, Matthew P., Cotton, Charles A. R., Perez-Sepulveda, Blanca, Turchyn, Alexandra V., Scanlan, David J., Smith, Alison G., Chisholm, Sallie W., Howe, Christopher J., 2015. Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. Proceedings of the National Academy of Sciences of the United States of America, 112 (44), pp. 13591-13596
- Zubkov, Mikhail V., Martin, Adrian P., Hartmann, Manuela, Grob, Carolina, Scanlan, David J., 2015. Dominant oceanic bacteria secure phosphate using a large extracellular buffer. Nature Communications, 6
- Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D., Scanlan, David J., 2015. Spontaneous deletion of an ?ORFanage? region facilitates host adaptation in a ?photosynthetic? cyanophage. PLoS One, 10 (7), pp. 1-13
- Grob, Carolina, Jardillier, Ludwig, Hartmann, Manuela, Ostrowski, Martin, Zubkov, Mikhail V., Scanlan, David J., 2015. Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition. Environmental Microbiology Reports, 7 (2), pp. 211-218
- Scanlan, David J., 2014. Bacterial vesicles in the ocean. Science, 343 (6167), pp. 143-144
- Puxty, Richard John, Millard, Andrew D., Evans, David J., Scanlan, David J., 2014. Shedding new light on viral photosynthesis. Photosynthesis Research, 126 (1), pp. 71-97
- Millard, Andrew D., Scanlan, David J., Gallagher, Connor, Marsh, Andrew, Taylor, Paul C., 2014. Unexpected evolutionary proximity of eukaryotic and cyanobacterial enzymes responsible for biosynthesis of retinoic acid and its oxidation. Molecular BioSystems, 10 (3), pp. 380-383
- Shilova, Irina N., Robidart, Julie C., James Tripp, H., Turk-Kubo, Kendra, Wawrik, Boris, Post, Anton F., Thompson, Anne W., Ward, Bess, Hollibaugh, James T., Millard, Andrew D., Ostrowski, Martin, Scanlan, David J., Paerl, Ryan W., Stuart, Rhona, Zehr, Jonathan P., 2014. A microarray for assessing transcription from pelagic marine microbial taxa. The ISME Journal, 8
- Barnett, James P., Scanlan, David J., Blindauer, Claudia A., 2014. Identification of major zinc-binding proteins from a marine cyanobacterium : insight into metal uptake in oligotrophic environments. Metallomics, 6 (7), pp. 1254-1268
- Hartmann, Manuela, Gómez-Pereira, Paola R., Grob, Carolina, Ostrowski, Martin, Scanlan, David J., Zubkov, Mikhail V., 2014. Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean. The ISME Journal, 8 (11), pp. 2280-2289
- Humily, Florian, Farrant, Gregory K., Marie, Dominique, Partensky, Frédéric, Mazard, Sophie, Perennou, Morgan, Labadie, Karine, Aury, Jean-Marc, Wincker, Patrick, Nicolas Segui, Audrey, Scanlan, David J., Garczarek, Laurence, 2014. Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus. FEMS Microbiology Ecology, 88 (2), pp. 231-249
- Kirkham, Amy R., Lepère, Cécile, Jardillier, Ludwig, Not, Fabrice, Bouman, Heather, Mead, A. (Andrew), Scanlan, David J., 2013. A global perspective on marine photosynthetic picoeukaryote community structure. The ISME Journal, 7 (5), pp. 922-936
- Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J., Zubkov, Mikhail V., 2013. Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3), pp. 603-614
- Voß, Björn, Bolhuis, Henk, Fewer, David P., Kopf, Matthias, Möke, Fred, Haas, Fabian, El-Shehawy, Rehab, Hayes, Paul, Bergman, Birgitta, Sivonen, Kaarina, Dittmann, Elke, Scanlan, David J., Hagemann, Martin, Stal, Lucas J., Hess, Wolfgang R., 2013. Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium nodularia spumigena CCY9414 based on a genome-transcriptome analysis. PLoS One, 8 (3)
- Mazard, Sophie, Wilson, William H., Scanlan, David J., 2012. Dissecting the physiological response to phosphorus stress in marine synechococcus isolates (cyanophyceae). Journal of Phycology, Vol.48 (No.1), pp. 94-105
- Barnett, James P., Scanlan, David J., Blindauer, Claudia A., 2012. Fractionation and identification of metalloproteins from a marine cyanobacterium. Analytical and Bioanalytical Chemistry, Vol.402 (No.10), pp. 3371-3377
- Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf, Blindauer, Claudia A., 2012. Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, 3
- Bouman, Heather A., Lepère, Cécile, Scanlan, David J., Osvaldo, Ulloa, 2012. Phytoplankton community structure in a high-nutrient, low-chlorophyll region of the eastern Pacific Subantarctic region during winter-mixed and summer-stratified conditions. Deep Sea Research Part I : Oceanographic Research Papers, 69, pp. 1-11
- Barnett, James P., Scanlan, David J., Blindauer, Claudia A., 2012. Protein fractionation and detection for metalloproteomics : challenges and approaches. Analytical and Bioanalytical Chemistry, Vol.402 (No.10), pp. 3311-3322
- Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Burkill, Peter H., Scanlan, David J., Zubkov, Mikhail V., 2012. Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences, 109 (15), pp. 5756-5760
- Mazard, Sophie, Ostrowski, Martin, Partensky, Frédéric, Scanlan, David J., 2012. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus. Environmental Microbiology, 14 (2), pp. 372-386
- Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R., Clokie, Martha R. J., 2011. Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8), pp. 2269-2274
- Weynberg, Karen Dawn, Allen, Michael J., Gilg, Ilana C., Scanlan, David J., Wilson, William H., 2011. Genome sequence of Ostreococcus tauri virus OtV-2enlightens the role of picoeukaryote niche separation in theocean. Journal of Virology, Vol.85 (No.9), pp. 4520-4529
- Grob, Carolina, Hartmann, Manuela, Zubkov, Mikhail V., Scanlan, David J., 2011. Invariable biomass-specific primary production of taxonomically discrete picoeukaryote groups across the Atlantic Ocean. Environmental Microbiology, 13 (12), pp. 3266-3274
- Shi, Xiao Li, Lepère, Cécile, Scanlan, David J., Vaulot, Daniel, 2011. Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PL o S One, Vol.6 (No.4)
- Barnett, James P., Robinson, Colin, Scanlan, David J., Blindauer, Claudia A., 2011. The Tat protein export pathway and its role in cyanobacterial metalloprotein biosynthesis. FEMS Microbiology Letters, Vol.325 (No.1), pp. 1-9
- Bouman, Heather A., Ulloa, Osvaldo, Barlow, Ray, Li, William K. W., Platt, Trevor, Zwirglmaier, Katrin, Scanlan, David J., Sathyendranath, Shubha, 2011. Water-column stratification governs the community structure of subtropical marine picophytoplankton. Environmental Microbiology Reports, 3 (4), pp. 473-482
- Kirkham, Amy R., Jardillier, Ludwig, Holland, Ross, Zubkov, Mikhail V., Scanlan, David J., 2011. Analysis of photosynthetic picoeukaryote community structure along an extended Ellett Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes. Deep Sea Research Part I: Oceanographic Research Papers, Vol.58 (No.7), pp. 733-744
- Mella-Flores, D., Mazard, S., Humily, F., Partensky, F., Mahé, F., Bariat, L., Courties, C., Marie, D., Ras, J., Mauriac, R., Jeanthon, C., Mahdi Bendif, E., Ostrowski, Martin, Scanlan, David J., Garczarek, L., 2011. Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?. Biogeosciences, Vol.8 (No.9), pp. 2785-2804
- Hartmann, Manuela, Grob, Carolina, Scanlan, David J., Martin, Adrian P., Burkill, Peter H., Zubkov, Mikhail V., 2011. Comparison of phosphate uptake rates by the smallest plastidic and aplastidic protists in the North Atlantic subtropical gyre. FEMS Microbiology Ecology, Vol.78 (No.2), pp. 327-335
- Kirkham, Amy R., Jardillier, Ludwig, Tiganescu, Ana, Pearman, John K., Zubkov, Mikhail V., Scanlan, David J., 2011. Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect. Environmental Microbiology, 13 (4), pp. 975-990
- Pitt, Frances Diana, Mazard, Sophie, Humphreys, Lee, Scanlan, David J., 2010. Functional characterization of synechocystis sp strain PCC 6803 pst1 and pst2 gene clusters reveals a novel strategy for phosphate uptake in a freshwater cyanobacterium. Journal of Bacteriology, Vol.192 (No.13), pp. 3512-3523
- Mary, Isabelle, Oliver, Anna, Skipp, Paul, Holland, Ross, Topping, Juliette, Tarran, Glen, Scanlan, David J., O'Connor, C. David, Whiteley, Andrew S., Burkill, Peter H., Zubkov, Mikhail V., 2010. Metaproteomic and metagenomic analyses of defined oceanic microbial populations using microwave cell fixation and flow cytometric sorting. FEMS Microbiology Ecology, Vol.74 (No.1), pp. 10-18
- Lavin, Paris, Gonzalez, Bernardo, Francisco Santibanez, J., Scanlan, David J., Ulloa, Osvaldo, 2010. Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical south Pacific. Environmental Microbiology Reports, Vol.2 (No.6), pp. 728-738
- Millard, Andrew D., Gierga, G., Clokie, Martha R. J., Evans, David J., Hess, Wolfgang R., Scanlan, David J., 2010. An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease. ISME Journal, The, Vol.2010 (No.4), pp. 1121-1135
- Ostrowski, Martin, Mazard, Sophie, Tetu, Sasha G., Phillippy, Katherine, Johnson, Daniel, Palenik, Brian P., Paulsen, Ian T., Scanlan, David J., 2010. PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus. ISME Journal, The, Vol.4 (No.7), pp. 908-921
- Jardillier, Ludwig, Zubkov, Mikhail V., Pearman, John K., Scanlan, David J., 2010. Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME Journal, Vol.4 (No.9), pp. 1180-1192
- Hartmann, Manuela, Zubkov, Mikhail V., Martin, Adrian P., Scanlan, David J., Burkill, Peter H., 2009. Assessing amino acid uptake by phototrophic nanoflagellates in nonaxenic cultures using flow cytometric sorting. FEMS Microbiology Letters, Vol.298 (No.2), pp. 166-173
- Millard, Andrew D., Zwirglmaier, Katrin, Downey, Mike J., Mann, Nicholas H., Scanlan, David J., 2009. Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region : implications for mechanisms of cyanophage evolution. Environmental Microbiology, 11 (9), pp. 2370-2387
- Zwirglmaier, Katrin, Spence, Edward M., Zubkov, Mikhail V., Scanlan, David J., Mann, Nicholas H., 2009. Differential grazing of two heterotrophic nanoflagellates on marine Synechococcus strains. Environmental Microbiology, Vol.11 (No.7), pp. 1767-1776
- Lepère, Cécile, Vaulot, Daniel, Scanlan, David J., 2009. Photosynthetic picoeukaryote community structure in the south east Pacific Ocean encompassing the most oligotrophic waters on Earth. Environmental Microbiology, Vol.11 (No.12), pp. 3105-3117
- Harris, Gayle N., Scanlan, David J., Geider, Richard J., 2009. Responses of Emiliania huxleyi (Prymnesiophyceae) to step changes in photon flux density. European Journal of Phycology, Vol.44 (No.1), pp. 31-48
- Shi, Xiao Li, Marie, D., Jardillier, Ludwig, Scanlan, David J., Vaulot, Daniel, 2009. Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS One, Vol.4 (No.10)
- Mary, Isabelle, Garczarek, Laurence, Tarran, Glen A., Kolowrat, Christian, Terry, Matthew J., Scanlan, David J., Burkill, Peter H., Zubkov, Mikhail V., 2008. Diel rhythmicity in amino acid uptake by Prochlorococcus. Environmental Microbiology, Vol.10 (No.8), pp. 2124-2131
- Mary, Isabelle, Tarran, Glen A., Warwick, Phillip E., Terry, Matthew J., Scanlan, David J., Burkill, Peter H., Zubkov, Mikhail V., 2008. Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean. FEMS Microbiology Ecology, Vol.63 (No.1), pp. 36-45
- Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, David J., Worden, A. Z., 2008. Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, Vol.10 (No.12), pp. 3349-3365
- Whitworth, David E., Holmes, Antony B., Irvine, Alistair G., Hodgson, D. A., Scanlan, David J., 2008. Phosphate acquisition components of the Myxococcus xanthus Pho regulon are regulated by both phosphate availability and development. Journal of Bacteriology, 190 (6), pp. 1997-2003
- Dufresne, Alexis, Ostrowski, Martin, Scanlan, David J., Garczarek, Laurence, Mazard, Sophie, Palenik, Brian P., Paulsen, Ian T., Tandeau de Marsac, Nicole, Johnson, Justin, Post, Anton F., Hess, Wolfgang R., Partensky, Frédéric, 2008. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology, Vol.9 (No.R90)
- Zwirglmaier, Katrin, Jardillier, Ludwig, Ostrowski, Martin, Mazard, Sophie, Garczarek, Laurence, Vaulot, Daniel, Not, Fabrice, Massana, Ramon, Ulloa, Osvaldo, Scanlan, David J., 2008. Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environmental Microbiology, Vol.10 (No.1), pp. 147-161
- Zwirglmaier, Katrin, Heywood, Jane L., Chamberlain, Katie, Woodward, E. Malcolm S., Zubkov, Mikhail V., Scanlan, David J., 2007. Basin-scale distribution patterns of picocyanobacterial lineages in the Atlantic Ocean. Environmental Microbiology, Vol.9 (No.5), pp. 1278-1290
- McDonald, Sarah M., Sarno, Diana, Scanlan, David J., Zingone, Adriana, 2007. Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, 50 (1), pp. 75-89
- Garczarek, Laurence, Dufresne, Alexis, Rousvoal, Sylvie, West, Nyree J., Mazard, Sophie, Marie, Dominique, Claustre, Herve, Raimbault, Patrick, Post, Anton F., Scanlan, David J., Partensky, Frederic, 2007. High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer. FEMS Microbiology Ecology, Vol.60 (No.2), pp. 189-206
- Zubkov, Mikhail V., Mary, Isabelle, Woodward, E. Malcolm S., Warwick, Phillip E., Fuchs, Bernhard M., Scanlan, David J., Burkill, Peter H., 2007. Microbial control of phosphate in the nutrient-depleted north Atlantic subtropical gyre. Environmental Microbiology, Vol.9 (No.8), pp. 2079-2089
- Chan, Yi-Wah, Nenninger, Anja, Clokie, Samuel J. H., Mann, Nicholas H., Scanlan, David J., Whitworth, Anna L., Clokie, Martha R. J., 2007. Pigment composition and adaptation in free-living and symbiotic strains of Acaryochloris marina. FEMS Microbiology Ecology, Vol.61 (No.1), pp. 65-73
- Six, Christophe, Thomas, Jean-Claude, Garczarek, Laurence, Ostrowski, Martin, Dufresne, Alexis, Blot, Nicolas, Scanlan, David J., Partensky, Frédéric, 2007. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology, Vol.8 (No.12)
- Fuller, Nicholas J., Campbell, Colin, Allen, David J., Pitt, Frances Diana, Zwirglmaier, Katrin, Le Gall, Florence, Vaulot, Daniel, Scanlan, David J., 2006. Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids. Aquatic Microbial Ecology, Vol.43 (No.1), pp. 79-93
- Fuller, Nicholas J., Tarran, Glen A., Cummings, Denise G., Woodward, E. Malcolm S., Orcutt, Karen M., Yallop, Marian, Le Gall, Florence, Scanlan, David J., 2006. Molecular analysis of photosynthetic picoeukaryote community structure along an Arabian Sea transect. LIMNOLOGY AND OCEANOGRAPHY, 51 (6), pp. 2502-2514
- Fuller, Nicholas J., Tarran, Glen A., Yallop, Marian, Orcutt, Karen M., Scanlan, David J., 2006. Molecular analysis of picocyanobacterial community structure along an Arabian Sea transect reveals distinct spatial separation of lineages. LIMNOLOGY AND OCEANOGRAPHY, 51 (6), pp. 2515-2526
- Somerfield, Paul J., Muhling, Martin, Fuller, Nicholas J., Millard, Andrew D., Dominique, Marie, Wilson, W. H., Scanlan, David J., Post, Anton F., Joint, Ian, Mann, Nicholas H., 2005. Genetic diversity of marine Synechococcus and co-occurring cyanophage communities : evidence for viral control of phytoplankton. Environmental Microbiology, 7 (4), pp. 499-508
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- Weynberg, Karen Dawn, Allen, Michael J., Ashelford, Kevin, Scanlan, David J., Wilson, William H., 2009. From small hosts come big viruses: the complete genome of a second Ostreococcus tauri virus, OtV-1. Environmental Microbiology, Blackwell, pp. 2821-2839
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| Title | Funder | Award start | Award end |
|---|---|---|---|
| VirFix : Cyanophage inhibition of oceanic CO2 fixation. ERC- AdG | European Research Council | 01 Jan 2021 | 31 Dec 2025 |
| Elucidating the consequences of picocyanobacterial lipid remodelling for global marine primary production estimates. | NERC | 01 Apr 2021 | 31 Mar 2024 |
| CENTA Doctoral Training Partnership (led by Birmingham) | NERC | 01 Oct 2014 | 30 Sep 2023 |
| JTS-100: A step change in accurately measuring photosynthesis | NERC | 01 Oct 2019 | 30 Sep 2020 |
| Phosphorus cycling in the soil-microbe-plant continuum of agri-ecosystems | BBSRC | 31 Dec 2014 | 31 Jul 2019 |
| Biogeochemical cycling of N-osmolytes in the surface ocean | NERC | 01 Oct 2014 | 30 Sep 2017 |
| Protistan grazing and viral infection of marine picoplankton: a role for the host cell surface? | NERC | 31 Dec 2012 | 31 Dec 2016 |
| MaCuMBA: Marine Microorganisms: Cultivation Methods for Improving their Biotechnological Applications | European Commission | 01 Aug 2012 | 31 Jul 2016 |
| Elucidating niche adaptation mechanisms in a ubiquitous marine phototroph: a targeted omics approach | NERC | 01 Apr 2011 | 31 Dec 2015 |
| Strategic Environmental Science Capital Call | NERC | 01 Jan 2014 | 30 Jun 2014 |
| SYNERGY - Marie Curie IEF - Joseph Christie de Oleza | European Commission | 03 Oct 2011 | 02 Oct 2013 |
| How important is prokaryotic photoheterotrophy in ecosystems of the Atlantic Ocean? | NERC | 01 Feb 2010 | 31 Jan 2013 |
| Additional funds for Dissecting, and revealing the controls on, the group-specific CO2 fixation budget of the Atlantic Ocean | NERC | 01 Oct 2012 | 31 Oct 2012 |
| SFAM Students into Work Grant for Daniel Yara | Society for Applied Microbiology | 01 Jun 2012 | 30 Sep 2012 |
| Regulatory gene networks and ecological distinctness in marine synechoccus | NERC | 01 Sep 2009 | 31 Aug 2012 |
| Dissecting, and revealing the controls on, the group-specific CO2 fixation, etc | NERC | 01 Jan 2009 | 31 Dec 2011 |
| PICOPAR | EU | 01 Nov 2009 | 31 Oct 2011 |
| Metal composition of marine cyanobacteria an indicator of niche adaptation and cell physiological state? | NERC | 01 Sep 2008 | 31 Aug 2011 |
| Do mixotrophic protists make oligotrophic oceanic... (subcontract from National Oceanography Centre, Southampton) | NERC | 01 Dec 2007 | 30 Nov 2010 |
| PICOFUNPAC: Functional Biodiversity of Photosynthetic Picoplankton. | ANR - Agence Nationale de La Recherche | 01 Jan 2007 | 31 Dec 2009 |
| Ring-Fish in microbial ecology | Leverhulme Trust | 01 Jun 2007 | 03 May 2009 |
| Defining the Molecular Bais of Phylogenetic Diversity in Marine Synechoccus/A Genomic Approach | NERC | 01 Jan 2006 | 31 Dec 2008 |
| The Myxococcus xanthus Pho regulon: functional characterisation of a complex system with multiple regulatory components. | BBSRC | 01 Oct 2005 | 30 Sep 2008 |
| Molecular diversity of marine photosynthetic picoeukaryotes and their contribution to C cycling | NERC | 01 Sep 2005 | 31 Aug 2008 |
| Marine Genomics Network of Excellence - Supplement 3 | EU | 01 Dec 2006 | 31 Dec 2007 |
| Photosynthetic physiology and niche adaption in marine cyanobaceria | NERC | 01 Oct 2004 | 01 Oct 2007 |
| SFAM Student into work for Mike Nicoll | Society for Applied Microbiology | 25 Jun 2007 | 31 Aug 2007 |
| Advantage West Midlands - Small Travel Grant | Advantage West Midlands | 21 Mar 2007 | 23 Mar 2007 |
| Charaterisation of giant proteins in marine cyanobacteria. | Society for Applied Microbiology | 17 Jul 2006 | 30 Sep 2006 |
| Nuffield Foundation Undergraduate Research Bursary | Nuffield Foundation | 17 Jul 2006 | 08 Sep 2006 |
| Molecular ecology and physiological diversity of marine synechococcus | NERC | 01 Jun 2003 | 31 May 2006 |
| In situ community structure of marine photosynthetic picoeukaryotes. | NERC | 02 Jan 2006 | 24 Feb 2006 |
| Marine Genomics Network of Excellence | EU | 01 Mar 2004 | 28 Feb 2005 |
| Marine Genomics Network of Excellence - supplement 1 | EU | 01 Mar 2004 | 28 Feb 2005 |
| Marine Geneomics Network of Excellence- supplement 2 | EU | 01 Mar 2004 | 28 Feb 2005 |
| Molecular Characterisation of photosynthetic picoeukaryotes | Society for General Microbiology | 12 Jul 2004 | 31 Aug 2004 |
| The molecular structure of photosynthesis in the oceans - Research Fship - Supplement | Royal Society | 01 Oct 1995 | 30 Sep 2003 |
| The molecular structure of photosynthesis in the oceans - Research Fship - Supplement | Royal Society | 01 Oct 1995 | 30 Sep 2003 |
| The molecular ecology of photosynthesis in the oceans | Royal Society | 01 Oct 1995 | 30 Sep 2000 |