Fong, Allison A., Hoppe, Clara J. M., Aberle, Nicole, Ashjian, Carin J., Assmy, Philipp, Bai, Youcheng, Bakker, Dorothee C. E., Balmonte, John P., Barry, Kevin R., Bertilsson, Stefan
et al.
(2024)
Overview of the MOSAiC expedition : Ecosystem. Elementa Science of the Anthropocene, 12 (1). 00135. doi:
10.1525/elementa.2023.00135 ISSN 2325-1026.
Luo, Wanrong, Zhao, Min, Dwidar, Mohammed, Gao, Yang, Xiang, Liyuan, Wu, Xueting, Medema, Marnix H., Xu, Shu, Li, Xiaozhi, Schäfer, Hendrik, Chen, Minhu, Feng, Rui and Zhu, Yijun (2024) Microbial assimilatory sulfate reduction-mediated H2S : an overlooked role in Crohn’s disease development. Microbiome, 12 (1). 152. doi:10.1186/s40168-024-01873-2 ISSN 2049-2618.
Tebbe, Dennis Alexander, Gruender, Charlotte Rose, Dlugosch, Leon, Lõhmus, Kertu, Rolfes, Sönke, Könneke, Martin, Chen, Yin, Engelen, Bert and Schäfer, Hendrik (2023) Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments. ISME Journal, 17 . pp. 2340-2351. doi:10.1038/s41396-023-01539-1 ISSN 1751-7362.
Knowlton, Nancy, Mock, Thomas, Boulton, William, Balmonte, John-Paul, Barry, Kevin, Bertilsson, Stefan, Bowman, Jeff, Buck, Moritz, Bratbak, Gunnar, Chamberlain, Emelia J.
et al.
(2022)
Multiomics in the central Arctic Ocean for benchmarking biodiversity change. PLoS Biology, 20 (10). e3001835. ISSN 1545-7885 doi:
10.1371/journal.pbio.3001835
Ghosh, Devanita, Whitworth, David E., Schäfer, Hendrik, Krishnamurthi, Srinivasan and Saha, Pradipta (2022) Editorial : Microbial mitigation of hazardous compounds in agro-ecosystems. Frontiers in Microbiology, 13 . 1015111. ISSN 1664-302X doi:10.3389/fmicb.2022.1015111
Kröber, Eileen, Mankowski, Anna and Schäfer, Hendrik (2022) Microorganisms associated with Sporobolus anglicus, an invasive dimethylsulfoniopropionate producing salt marsh plant, are an unrecognized sink for dimethylsulfide. Frontiers in Microbiology, 13 . 950460. doi:10.3389/fmicb.2022.950460 ISSN 1664-302X.
Wang, Jing, Chu, Yi-Xuan, Schäfer, Hendrik, Tian, Guangming and He, Ruo (2022) CS2 increasing CH4-derived carbon emissions and active microbial diversity in lake sediments. Environmental Research, 208 . 112678. doi:10.1016/j.envres.2022.112678 ISSN 0013-9351.
Tebbe, Dennis Alexander, Geihser, Simone, Wemheuer, Bernd, Daniel, Rolf, Schäfer, Hendrik and Engelen, Bert (2022) Seasonal and zonal succession of bacterial communities in North Sea salt marsh sediments. Microorganisms, 10 (5). e859. doi:10.3390/microorganisms10050859 ISSN 2076-2607.
Palmer, Jess, Hilton, Sally, Picot, Emma, Bending, G. D. and Schäfer, Hendrik (2021) Tree phyllospheres are a habitat for diverse populations of CO-oxidizing bacteria. Environmental Microbiology, 23 (10). pp. 6309-6327. doi:10.1111/1462-2920.15770 ISSN 1462-2912.
Picot, Emma, Hale, Chris C., Hilton, Sally, Teakle, Graham R., Schäfer, Hendrik, Huang, Yong-Ju, Perryman, Sarah, West, Jon S. and Bending, G. D. (2021) Contrasting responses of rhizosphere bacterial, fungal, protist, and nematode communities to nitrogen fertilization and crop genotype in field grown oilseed rape (Brassica napus). Frontiers in Sustainable Food Systems, 5 . 613269. doi:10.3389/fsufs.2021.613269 ISSN 2571-581X.
Cook, Sarah, Price, Oliver, King, Andrew, Finnegan, Chris, van Egmond, Roger, Schäfer, Hendrik, Pearson, Jonathan M., Abolfathi, Soroush and Bending, G. D. (2020) Bedform characteristics and biofilm community development interact to modify hyporheic exchange. Science of The Total Environment, 749 . 141397. doi:10.1016/j.scitotenv.2020.141397 ISSN 0048-9697.
Cook, Sarah, Chan, Hui-Ling, Abolfathi, Soroush, Bending, G. D., Schäfer, Hendrik and Pearson, Jonathan M. (2020) Data for Longitudinal dispersion of microplastics in aquatic flows using fluorometric techniques. [Dataset]
Cook, Sarah, Chan, Hui-Ling, Abolfathi, Soroush, Bending, G. D., Schäfer, Hendrik and Pearson, Jonathan M. (2020) Longitudinal dispersion of microplastics in aquatic flows using fluorometric techniques. Water Research, 170 . 115337. doi:10.1016/j.watres.2019.115337 ISSN 0043-1354.
Dixon, Joanna L., Hopkins, Frances E., Stephens, John A. and Schäfer, Hendrik (2020) Seasonal changes in microbial dissolved organic sulfur transformations in coastal waters. Microorganisms, 8 (3). e337. doi:10.3390/microorganisms8030337 ISSN 2076-2607.
Schäfer, Hendrik and Eyice, Özge (2019) Microbial cycling of methanethiol. Current Issues in Molecular Biology, 33 . pp. 173-182. doi:10.21775/CIMB.033.173 ISSN 14673037.
Chen, Yin and Schäfer, Hendrik (2019) Towards a systematic understanding of structure–function relationship of dimethylsulfoniopropionate‐catabolizing enzymes. Molecular Microbiology, 111 (6). pp. 1399-1403. doi:10.1111/mmi.14230 ISSN 0950-382X.
Kröber, Eileen and Schäfer, Hendrik (2019) Identification of proteins and genes expressed by Methylophaga thiooxydans during growth on dimethylsulfide and their presence in other members of the genus. Frontiers in Microbiology, 10 . 1132. doi:10.3389/fmicb.2019.01132 ISSN 1664-302X.
Veras, Dimitri, Armstrong, David J., Blake, James A., Gutierrez-Marcos, José F., Jackson, Alan P. and Schäfer, Hendrik (2018) Dynamical and biological panspermia constraints within multi-planet exosystems. Astrobiology, 18 (9). pp. 1106-1122. doi:10.1089/ast.2017.1786 ISSN 1531-1074.
Eyice, Özge, Myronova, Natalia, Pol, Arjan, Carrion, Ornella, Todd, Jonathan, Smith, Tom J., Gurman, Stephen J., Cuthbertson, Adam, Mazard, Sophie, Mennink-Kersten, Monique A. S. H. , Bugg, Tim, Andersson, K. Kristoffer, Johnston, Andrew W. B., Op Den Camp, Huub J. M. and Schäfer, Hendrik (2018) Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere. ISME Journal, 12 (1). 145-160 . doi:10.1038/ismej.2017.148 ISSN 1751-7362.
Pol, Arjan, Renkema, G. Herma, Tangerman, Albert, Winkel, Edwin G., Engelke, Udo F., Brouwer, Arjan P. M. de, Lloyd, Kent C., Araiza, Renee S., Heuvel, Lambert van den , Omran, Heymut
et al.
(2018)
Mutations in SELENBP1, encoding a novel human methanethiol oxidase, cause extraoral halitosis. Nature Genetics, 50 (1). pp. 120-129. doi:
10.1038/s41588-017-0006-7 ISSN 1061-4036.
Kowalczyk, Agnieszka, Price, Oliver R., van der Gast, Christopher J., Finnegan, Christopher J., van Egmond, Roger A., Schäfer, Hendrik and Bending, G. D. (2016) Spatial and temporal variability in the potential of river water biofilms to degrade p-nitrophenol. Chemosphere, 164 . pp. 355-362. doi:10.1016/j.chemosphere.2016.08.095 ISSN 0045-6535.
Zhu, Yijun , Ksibe, Amira Z., Schäfer, Hendrik, Blindauer, Claudia A., Bugg, Tim and Chen, Yin (2016) O2-independent demethylation of trimethylamine N-oxide by Tdm of Methylocella silvestris. FEBS Journal, 283 (21). pp. 3979-3993. doi:10.1111/febs.13902 ISSN 1742-464X.
Lidbury, Ian, Kröber, Eileen, Zhang, Zhidong, Zhu, Yijun , Murrell, J. C. (J. Colin), Chen, Yin and Schäfer, Hendrik (2016) A mechanism for bacterial transformation of dimethylsulfide to dimethylsulfoxide : a missing link in the marine organic sulfur cycle. Environmental Microbiology, 18 . pp. 2754-2766. doi:10.1111/1462-2920.13354 ISSN 1462-2912.
Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x ISSN 0302-8933.
Eyice, Özge, Namura, Motonobu, Chen, Yin, Mead, A. (Andrew), Samavedam, Siva and Schäfer, Hendrik (2015) SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. The ISME Journal, 9 . pp. 2336-2348. doi:10.1038/ismej.2015.37 ISSN 1751-7362.
Kowalczyk, Agnieszka, Eyice, Özge, Schäfer, Hendrik, Price, Oliver R, Finnegan, Christopher J., van Egmond, Roger A., Shaw, Liz J., Barrett, Glyn and Bending, G. D. (2015) Characterization of para-nitrophenol degrading bacterial communities in river water using functional markers and stable isotope probing. Applied and Environmental Microbiology, 81 (19). pp. 6890-6900. AEM.01794-15. doi:10.1128/AEM.01794-15 ISSN 0099-2240.
Kowalczyk, Agnieszka, Martin, Timothy James, Price, Oliver Richard, Snape, Jason, van Egmond, Roger Albert, Finnegan, Christopher James, Schäfer, Hendrik, Davenport, Russell James and Bending, G. D. (2015) Refinement of biodegradation tests methodologies and the proposed utility of new microbial ecology techniques. Ecotoxicology and Environmental Safety, 111 . pp. 9-22. doi:10.1016/j.ecoenv.2014.09.021 ISSN 0147-6513.
Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506 ISSN 1664-302X.
Zhu, Yijun , Jameson, Eleanor, Parslow, Rosemary A., Lidbury, Ian, Fu, Tiantian, Dafforn, Tim, Schäfer, Hendrik and Chen, Yin (2014) Identification and characterization of trimethylamine N-oxide (TMAO) demethylase and TMAO permease in Methylocella silvestris BL2. Environmental Microbiology, 16 (10). pp. 3318-3330. doi:10.1111/1462-2920.12585 ISSN 1462-2912.
Zhu, Yijun , Jameson, Eleanor, Cosatti, Marialuisa , Schäfer, Hendrik, Rajakumar, Kumar , Bugg, Tim and Chen, Yin (2014) Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota. Proceedings of the National Academy of Sciences of the United States of America, 111 (11). pp. 4268-4273. doi:10.1073/pnas.1316569111 ISSN 0027-8424.
Mazard, Sophie and Schäfer, Hendrik (2014) Stable isotope probing to study functional components of complex microbial ecosystems. In: Paulsen, Ian T. and Holmes, Andrew J., (eds.) Environmental Microbiology. Methods in Molecular Biology, Volume 1096 . Humana Press, pp. 169-180. ISBN 9781627037112
Kappler, U. and Schäfer, Hendrik (2014) Transformations of dimethylsulfide. In: Kroneck, Peter M. H. and Sosa Torres, Martha E., (eds.) The Metal-Driven Biogeochemistry of Gaseous Compounds in the Environment. Metal Ions in Life Sciences, 14 . Springer Netherlands, pp. 279-313. ISBN 9789401792684
Davies, Lawrence O., Bramke, Irene, France, Emma, Marshall, Samantha, Oliver, Robin, Nichols, Carol, Schäfer, Hendrik and Bending, G. D. (2013) Non-UV light influences the degradation rate of crop protection products. Environmental Science & Technology, Volume 47 (Number 15). p. 130712083104003. doi:10.1021/es402139x ISSN 0013-936X.
Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, G. D. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. doi:10.1371/journal.pone.0069048 ISSN 1932-6203.
Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x ISSN 03781097.
Boden, Rich, Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, Vol.322 (No.2). pp. 188-193. doi:10.1111/j.1574-6968.2011.02349.x ISSN 0378-1097.
Boden, Rich, Ferriera, S., Johnson, J., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph methylophaga thiooxydans DMS010. Journal of Bacteriology, Vol.193 (No.12). pp. 3154-3155. doi:10.1128/JB.00388-11 ISSN 0021-9193.
Boden, Rich, Borodina, E., Wood, A. P., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from hyphomicrobium sulfonivorans. Journal of Bacteriology, Vol.193 (No.5). pp. 1250-1258. doi:10.1128/JB.00977-10 ISSN 0021-9193.
Boden, Rich, Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2010) Oxidation of dimethylsulfide to tetrathionate by Methylophaga thiooxidans sp. nov.: a new link in the sulfur cycle. Environmental Microbiology, Vol.12 (No.10). pp. 2688-2699. doi:10.1111/j.1462-2920.2010.02238.x ISSN 1462-2912.
Chen, Yin, Scanlan, Julie, Song, Lijiang, Crombie, Andrew, Rahman, M. Tanvir, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2010) Gamma-Glutamylmethylamide Is an Essential Intermediate in the Metabolism of Methylamine by Methylocella silvestris. Applied and Environmental Microbiology, Vol.76 (No.13). pp. 4530-4537. doi:10.1128/AEM.00739-10 ISSN 0099-2240.
Latypova, Ekaterina, Yang, Song, Wang, Yi-Shun, Wang, Tiansong, Chavkin, Theodore A., Hackett, Murray, Schaefer, Hendrik and Kalyuzhnaya, Marina G. (2010) Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5. Molecular Microbiology, Vol.75 (No.2). pp. 426-439. doi:10.1111/j.1365-2958.2009.06989.x ISSN 0950-382X.
Schäfer, Hendrik, Myronova, Natalia and Boden, Rich (2010) Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere. Journal of Experimental Botany, Vol.61 (No.2). pp. 315-334. doi:10.1093/jxb/erp355 ISSN 0022-0957.
Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09 ISSN 0099-2240.
Cunliffe, Michael, Harrison, Emma, Salter, Matthew, Schaefer, Hendrik, Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Comparison and validation of sampling strategies for the molecular microbial analysis of surface microlayers. Aquatic Microbial Ecology, Vol.57 (No.1). pp. 69-77. doi:10.3354/ame01330 ISSN 0948-3055.
Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08 ISSN 0099-2240.
Cunliffe, Michael, Schaefer, Hendrik, Harrison, E. (Emma), Cleave, Simon, Upstill-Goddard, R. C. (Robert C.) and Murrell, J. C. (J. Colin) (2008) Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. ISME Journal, Volume 2 (Number 7). pp. 776-789. doi:10.1038/ismej.2008.28 ISSN 1751-7362.
Schaefer, Hendrik, Ferdelman, Timothy G., Fossing, Henrik and Muyzer, Gerard (2007) Microbial diversity in deep sediments of the Benguela Upwelling System. Aquatic Microbial Ecology, Vol.50 (No.1). pp. 1-9. doi:10.3354/ame01164 ISSN 0948-3055.
Neufeld, Josh D., Schäfer, Hendrik, Cox, Michael J., Boden, Rich, McDonald, Ian R. and Murrell, J. C. (J. Colin) (2007) Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism. ISME Journal, Vol.1 (No.6). pp. 480-491. doi:10.1038/ismej.2007.65 ISSN 1751-7362.
Schäfer, Hendrik (2007) Isolation of Methylophaga spp. from marine dimethylsulfide-degrading enrichment cultures and identification of polypeptides induced during growth on dimethylsulfide. Applied and Environmental Microbiology, Vol.73 (No.8). pp. 2580-2591. doi:10.1128/AEM.02074-06 ISSN 0099-2240.