Job Title
Professor
Department
Computer Science
Phone
024 7657 3795
Web Link
Research Interests
Computational Pathology, Applied Machine Learning, Transparent AI, Cancer Biomarkers
Biography
Hailing from the ancient Asian city of Multan, Nasir Rajpoot is the GSK Professor of Computational Pathology at the University of Warwick and Honorary Scientist at the Department of Pathology, University Hospitals Coventry & Warwickshire (UHCW) NHS Trust. Prior to completing his PhD in Computer Science from Warwick in 2001, he was a Postgraduate Research Fellow in the Applied Math program (partially based at the School of Medicine) at Yale University (USA) during 1998-2000 and a Systems Engineering Fellow at PIEAS (Pakistan) during 1994-1996.
Prof Rajpoot is the founding Director of Tissue Image Analytics (TIA) Centre (previously the TIA lab) at Warwick since 2012 and also co-Director of the recently funded £15m PathLAKE centre of excellence on AI in pathology since Jan 2019. The focus of current research in TIA Centre led by Prof Rajpoot is on AI and machine learning algorithms for the study of histological and multi-omic markers of cancer biology, with applications to early detection of cancer and stratification of cancer patients in terms of recurrence, progression and response to therapy. He has been active in the digital pathology community for almost two decades now and has delivered over 80 invited and keynote talks since 2015 at various national and international events and institutions.
Prof Rajpoot recently served as President of the European Congress on Digital Pathology (ECDP), which took place at Warwick in April 2019. Previously, he served as the General Chair of the UK Medical Image Understanding and Analysis (MIUA) conference in 2010 and as the Technical Chair of the British Machine Vision Conference (BMVC) in 2007. He co-chaired several meetings in the histology image analysis (HIMA) series since 2008 and served as a founding PC member of the SPIE Digital Pathology meeting since 2012. He is a Senior Member of IEEE and member of the Association of the Computing Machinery (ACM), the British Association of Cancer Research (BACR), the European Association of Cancer Research (EACR) and the American Society of Clinical Oncology (ASCO).
Prof Rajpoot was recently awarded the Wolfson Fellowship by the UK Royal Society and the Turing Fellowship by the Alan Turing Institute, the UK's national data science institute.
- Dawood, Muhammad, Vu, Quoc Dang, Young, Lawrence S., Branson, Kim, Jones, Louise, Rajpoot, Nasir M., Minhas, Fayyaz ul Amir Afsar, 2024. Cancer drug sensitivity prediction from routine histology images. npj Precision Oncology, 8 (1)
- Azam, Ayesha S., Tsang, Yee?Wah, Thirlwall, Jenny, Kimani, Peter K., Sah, Shatrughan, Gopalakrishnan, Kishore, Boyd, Clinton, Loughrey, Maurice B., Kelly, Paul J., Boyle, David P., Salto?Tellez, Manuel, Clark, David, Ellis, Ian O., Ilyas, Mohammad, Rakha, Emad, Bickers, Adam, Roberts, Ian S. D., Soares, Maria F., Neil, Desley A. H., Takyi, Abi et al (Select to open full list), 2024. Digital pathology for reporting histopathology samples, including cancer screening samples ? definitive evidence from a multisite study. Histopathology
- Zamanitajeddin, Neda, Jahanifar, Mostafa, Bilal, Mohsin, Eastwood, Mark, Rajpoot, Nasir M., 2024. Social network analysis of cell networks improves deep learning for prediction of molecular pathways and key mutations in colorectal cancer. Medical Image Analysis, 93
- Pocock, Johnathan, Raza, Shan-e-Ahmed, Minhas, Fayyaz ul Amir Afsar, Rajpoot, Nasir M. (Nasir Mahmood), 2023. WSIC : a Python package and command-line interface for fast whole slide image conversion. Bioinformatics Advances, 3 (1)
- Deshpande, Srijay, Dawood, Muhammad, Minhas, Fayyaz, Rajpoot, Nasir, 2023. SynCLay: Interactive synthesis of histology images from bespoke cellular layouts.. Medical Image Analysis, 91
- Bilal, Mohsin, Tsang, Yee Wah, Ali, Mahmoud, Graham, Simon, Hero, Emily, Wahab, Noorul, Dodd, Katherine, Sahota, Harvir, Wu, Shaobin, Lu, Wenqi, Jahanifar, Mostafa, Robinson, Andrew, Azam, Ayesha, Benes, Ksenija, Nimir, Mohammed, Hewitt, Katherine, Bhalerao, Abhir, Eldaly, Hesham, Raza, Shan E. Ahmed, Gopalakrishnan, Kishore et al (Select to open full list), 2023. Development and validation of artificial intelligence-based prescreening of large-bowel biopsies taken in the UK and Portugal : a retrospective cohort study. The Lancet. Digital health, 5 (11), pp. e786-e797
- Awan, Ruqayya, Raza, Shan-e-Ahmed, Lotz, Johannes, Weiss, Nick, Rajpoot, Nasir M., 2023. Deep feature based cross-slide registration. Computerized Medical Imaging and Graphics, 104
- Dawood, Muhammad, Eastwood, Mark, Jahanifar, Mostafa, Young, Lawrence S., Ben-Hur, Asa, Branson, Kim, Jones, Louise, Rajpoot, Nasir M., Minhas, Fayyaz ul Amir Afsar, 2023. Cross-linking breast tumor transcriptomic states and tissue histology. Cell Reports Medicine, 4 (12)
- Gunesli, Gozde, Bilal, Mohsin, Raza, Shan E. Ahmed, Rajpoot, Nasir M. (Nasir Mahmood), 2023. A federated learning approach to tumor detection in colon histology images. Journal of Medical Systems, 47
- Wahab, Noorul, Toss, Michael, Miligy, Islam M., Jahanifar, Mostafa, Atallah, Nehal M., Lu, Wenqi, Graham, Simon, Bilal, Mohsin, Bhalerao, Abhir, Lashen, Ayat G., Makhlouf, Shorouk, Ibrahim, Asmaa Y., Snead, David, Minhas, Fayyaz ul Amir Afsar, Raza, Shan E. Ahmed, Rakha, Emad, Rajpoot, Nasir M. (Nasir Mahmood), 2023. AI-enabled routine H&E image based prognostic marker for early-stage luminal breast cancer. npj Precision Oncology, 7 (1)
- Albusayli, Rawan, Graham, J. Dinny, Pathmanathan, Nirmala, Shaban, Muhammad, Raza, Shan E. Ahmed, Minhas, Fayyaz ul Amir Afsar, Armes, Jane E., Rajpoot, Nasir M. (Nasir Mahmood), 2023. Artificial intelligence?based digital scores of stromal tumour?infiltrating lymphocytes and tumour?associated stroma predict disease?specific survival in triple?negative breast cancer. The Journal of Pathology, 260 (1), pp. 32-42
- 'Shaban, Muhammad, 'Raza, Shan E. Ahmed, 'Hassan, Mariam, 'Jamshed, Arif, 'Mushtaq, Sajid, 'Loya, Asif, 'Batis, Nikolaos, 'Brooks, Jill, 'Nankivell, Paul, 'Sharma, Neil, 'Robinson, Max, 'Mehanna, Hisham, 'Khurram, Syed Ali, 'Rajpoot, Nasir M. (Nasir Mahmood), 2022. 'A digital score of tumour?associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. The Journal of Pathology, 256 (2), pp. 174-185
- Thampi, Vipin, Hariprasad, Roopa, John, Amrita, Nethan, Suzanne, Dhanasekaran, Kavitha, Kumar, Vipin, Birur, Praveen, Thakur, J. S., Lilford, Richard, Rajpoot, Nasir M., Gill, Paramjit, 2022. Feasibility of training community health workers in the detection of oral cancer. JAMA Network Open, 5 (1)
- 'Hassan, Taimur, 'Javed, Sajid, 'Mahmood, Arif, 'Qaiser, Talha, 'Werghi, Naoufel, 'Rajpoot, Nasir M., 2022. 'Nucleus classification in histology images using message passing network. Medical Image Analysis, 79
- 'Foote, Alex, 'Asif, Amina, 'Rajpoot, Nasir, 'Minhas, Fayyaz, 2022. 'REET : robustness evaluation and enhancement toolbox for computational pathology. Bioinformatics, 38 (12), pp. 3312-3314
- 'Mariam, Komal, 'Afzal, Osama Mohammed, 'Hussain, Wajahat, 'Javed, Muhammad Umar, 'Kiyani, Amber, 'Rajpoot, Nasir M. (Nasir Mahmood), 'Khurram, Syed Ali, 'Khan, Hassan Aqeel, 2022. 'On smart gaze based annotation of histopathology images for training of deep convolutional neural networks. IEEE Journal of Biomedical and Health Informatics
- 'Mahmood, Hanya, 'Bradburn, Mike, 'Rajpoot, Nasir M. (Nasir Mahmood), 'Islam, Nadim Mohammed, 'Kujan, Omar, 'Khurram, Syed Ali, 2022. 'Prediction of malignant transformation and recurrence of oral epithelial dysplasia using architectural and cytological feature specific prognostic models. Modern Pathology, 35, pp. 1151-1159
- Sorell, Tom, Rajpoot, Nasir M. (Nasir Mahmood), Verrill, Clare, 2022. Ethical issues in computational pathology. Journal of Medical Ethics, 48 (4), pp. 278-284
- Lu, Wenqi, Miligy, Islam M., Minhas, Fayyaz, Park, Young Saeng, Snead, David R. J., Rakha, Emad A., Verrill, Clare, Rajpoot, Nasir, 2022. Lessons from a breast cell annotation competition series for school pupils. Scientific Reports, 12 (1)
- Lu, Wenqi, Toss, Michael, Dawood, Muhammad, Rakha, Emad, Rajpoot, Nasir, Minhas, Fayyaz, 2022. SlideGraph+ : whole slide image level graphs to predict HER2 status in breast cancer. Medical Image Analysis, 80
- Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif, Batis, Nikolaos, Brooks, Jill, Nankivell, Paul, Sharma, Neil, Robinson, Max, Mehanna, Hisham, Khurram, Syed Ali, Rajpoot, Nasir M. (Nasir Mahmood), Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif et al (Select to open full list), 2021. A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. The Journal of Pathology
- Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif, Batis, Nikolaos, Brooks, Jill, Nankivell, Paul, Sharma, Neil, Robinson, Max, Mehanna, Hisham, Khurram, Syed Ali, Rajpoot, Nasir M. (Nasir Mahmood), Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif et al (Select to open full list), 2021. A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. The Journal of Pathology
- Koohbanani, Navid Alemi, Unnikrishnan, Balagopal, Khurram, Syed Ali, Krishnaswamy, Pavitra, Rajpoot, Nasir M. (Nasir Mahmood), 2021. Self-path : self-supervision for classification of pathology images with limited annotations. IEEE Transactions on Medical Imaging, 40 (10), pp. 2845-2856
- Mahmood, Hanya, Shaban, Muhammad, Rajpoot, Nasir M. (Nasir Mahmood), Khurram, Syed A, 2021. Artificial Intelligence-based methods in head and neck cancer diagnosis : an overview. British Journal of Cancer, 124, pp. 1934-1940
- Khurram, I., Fraz, Muhammad Moazam, Shahzad, M., Rajpoot, Nasir M. (Nasir Mahmood), 2021. Dense-CaptionNet : a sentence generation architecture for fine-grained description of image semantics. Cognitive Computation, 13, pp. 595-611
- Awan, Ruqayya, Benes, Ksenija, Azam, Ayesha, Song, Tzu?Hsi, Shaban, Muhammad, Verrill, Clare, Tsang, Yee Wah, Snead, David, Minhas, Fayyaz ul Amir Afsar, Rajpoot, Nasir M., 2021. Deep learning based digital cell profiles for risk stratification of urine cytology images. Cytometry Part A, 99 (7), pp. 732-742
- Azam, Ayesha, Miligy, Islam, Kimani, Peter K., Maqbool, Heeba, Hewitt, Katherine, Rajpoot, Nasir M., Snead, David, 2021. Diagnostic concordance and discordance in digital pathology : a systematic review and meta-analysis. Journal of Clinical Pathology, 74, pp. 448-455
- Bilal, Mohsin, Raza, Shan-e-Ahmed, Azam, Ayesha, Graham, Simon, Ilyas, Mohammad, Cree, Ian A., Snead, David, Minhas, Fayyaz ul Amir Afsar, Rajpoot, Nasir M., 2021. Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images : a retrospective study. The Lancet Digital Health, 3 (12), pp. e763-e772
- Shaban, Muhammad, Awan, Ruqayya, Fraz, Muhammad Moazam, Azam, Ayesha, Tsang, Yee-Wah, Snead, David, Rajpoot, Nasir M. (Nasir Mahmood), 2020. Context-aware convolutional neural network for grading of colorectal cancer histology images. IEEE Transactions on Medical Imaging, 39 (7), pp. 2395-2405
- Javed, Sajid, Mahmood, Arif, Fraz, Muhammad Moazam, Koohbanani, Navid Alemi, Benes, Ksenija, Tsang, Yee-Wah, Hewitt, Katherine J., Epstein, D. B. A., Snead, David, Rajpoot, Nasir M. (Nasir Mahmood), 2020. Cellular community detection for tissue phenotyping in colorectal cancer histology images. Medical Image Analysis, 63
- 'Fraz, Muhammad Moazam, 'Khurram, S. A., 'Graham, Simon, 'Shaban, Muhammad, 'Hassan, M., 'Loya, A., 'Rajpoot, Nasir M. (Nasir Mahmood), 2020. 'FABnet : feature attention-based network for simultaneous segmentation of microvessels and nerves in routine histology images of oral cancer. Neural Computing and Applications, 32, pp. 9915-9928
- Graham, Simon, Epstein, D. B. A., Rajpoot, Nasir M. (Nasir Mahmood), 2020. Dense steerable filter CNNs for exploiting rotational symmetry in histology images. IEEE Transactions on Medical Imaging, 39 (12), pp. 4124-4136
- Mahmood, H., Shaban, Muhammad, Indave, B.I., Santos-Silva, A.R., Rajpoot, Nasir M. (Nasir Mahmood), Khurram, S.A., 2020. Use of artificial intelligence in diagnosis of head and neck precancerous and cancerous lesions : a systematic review. Oral Oncology, 110
- Koohbanani, Navid Alemi, Jahanifar, Mostafa, Tajadin, Neda Zamani, Rajpoot, Nasir M. (Nasir Mahmood), 2020. NuClick : a deep learning framework for interactive segmentation of microscopic images. Medical Image Analysis, 65
- Rakha, Emad A., Alsaleem, Mansour, ElSharawy, Khloud A., Toss, Michael S., Raafat, Sara, Mihai, Raluca, Minhas, Fayyaz ul Amir Afsar, Green, Andrew R., Rajpoot, Nasir M. (Nasir Mahmood), Dalton, Les W., Mongan, Nigel P., 2020. Visual histological assessment of morphological features reflects the underlying molecular profile in invasive breast cancer : a morpho?molecular study. Histopathology, 77 (4), pp. 631-645
- Song, Tzu-Hsi, Sanchez Silva, Victor, ElDaly, Hesham, Rajpoot, Nasir M., 2019. Simultaneous cell detection and classification in bone marrow histology images. IEEE Journal of Biomedical and Health Informatics, 23 (4), pp. 1469-1476
- Veta, Mitko, Heng, Yujing J., Stathonikos, Nikolas, Bejnordi, Babak Ehteshami, Beca, Francisco, Wollmann, Thomas, Rohr, Karl, Shah, Manan A., Wang, Dayong, Rousson, Mikael, Hedlund, Martin, Tellez, David, Ciompi, Francesco, Zerhouni, Erwan, Lanyi, David, Viana, Matheus, Kovalev, Vassili, Liauchuk, Vitali, Phoulady, Hady Ahmady, Qaiser, Talha et al (Select to open full list), 2019. Predicting breast tumor proliferation from whole-slide images : the TUPAC16 challenge. Medical Image Analysis, 54, pp. 111-121
- Shapcott, Mary, Hewitt, Katherine J., Rajpoot, Nasir M., 2019. Deep learning with sampling in colon cancer histology. Frontiers in Bioengineering and Biotechnology, 7 (52)
- Colling, Richard, Pitman, Helen, Oien, Karin, Rajpoot, Nasir M., Macklin, Philip, Snead, David, Sackville, Tony, Verrill, Clare, 2019. Artificial intelligence in digital pathology : a roadmap to routine use in clinical practice. Journal of Pathology, 249 (2), pp. 143-150
- Shaban, Muhammad, Mahmood, Arif, Al-Maadeed, Somaya Ali, Rajpoot, Nasir M., 2019. An information fusion framework for person localization via body pose in spectator crowds. Information Fusion, 51, pp. 178-188
- Graham, Simon, Chen, Hao, Gamper, Jevgenij, Dou, Qi, Heng, Pheng-Ann, Snead, David, Tsang, Yee Wah, Rajpoot, Nasir M. (Nasir Mahmood), 2019. MILD-Net : Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Analysis, 52, pp. 199-211
- Qaiser, Talha, Tsang, Yee-Wah, Taniyama, Daiki, Sakamoto, Naoya, Nakane, Kazuaki, Epstein, D. B. A., Rajpoot, Nasir M. (Nasir Mahmood), 2019. Fast and accurate tumor segmentation of histology images using persistent homology and deep convolutional features. Medical Image Analysis, 55, pp. 1-14
- Lin, Huangjing, Chen, Hao, Graham, Simon, Dou, Qi, Rajpoot, Nasir M. (Nasir Mahmood), Heng, Pheng-Ann, 2019. Fast ScanNet : fast and dense analysis of multi-gigapixel whole-slide images for cancer metastasis detection. IEEE Transactions on Medical Imaging, 38 (8), pp. 1948-1958
- Raza, Shan-e-Ahmed, Cheung, Linda, Shaban, Muhammad, Graham, Simon, Epstein, D. B. A., Pelengaris, Stella, Khan, Michael, Rajpoot, Nasir M., 2019. Micro-Net : a unified model for segmentation of various objects in microscopy images. Medical Image Analysis, 52, pp. 160-173
- Shaban, Muhammad, Khurram, Syed Ali, Fraz, Muhammad Moazam, Alsubaie, Najah, Masood, Iqra, Mushtaq, Sajid, Hassan, Mariam, Loya, Asif, Rajpoot, Nasir M. (Nasir Mahmood), 2019. A novel digital score for abundance of tumour infiltrating lymphocytes predicts disease free survival in oral squamous cell carcinoma. Scientific Reports, 9
- Qaiser, Talha, Rajpoot, Nasir M. (Nasir Mahmood), 2019. Learning where to see : a novel attention model for automated immunohistochemical scoring. IEEE Transactions on Medical Imaging, 38 (11), pp. 2620-2631
- Pell, Robert, Oien, Karin, Robinson, Max, Pitman, Helen, Rajpoot, Nasir M. (Nasir Mahmood), Rittscher, Jens, Snead, David, Verrill, Clare, Driskell, Owen J, Hall, Andy, James, Jacqueline, Jones, Louise J, Craig, Clare, Sloan, Philip, Thomas, Gareth J, Elliott, Philip, Cheang, Maggie, Rodriguez-Justo, Manuel, Rees, Gabrielle, Salto-Tellez, Manuel et al (Select to open full list), 2019. The use of digital pathology and image analysis in clinical trials. The Journal of Pathology, 5 (2), pp. 81-90
- Vu, Quoc Dang, Graham, Simon, Kurc, Tahsin, To, Minh Nguyen Nhat, Shaban, Muhammad, Qaiser, Talha, Koohbanani, Navid Alemi, Khurram, Syed Ali, Kalpathy-Cramer, Jayashree, Zhao, Tianhao, Gupta, Rajarsi, Kwak, Jin Tae, Rajpoot, Nasir M. (Nasir Mahmood), Saltz, Joel, Farahani, Keyvan, 2019. Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Frontiers in Bioengineering and Biotechnology, 7
- Graham, Simon, Vu, Quoc Dang, Raza, Shan E. Ahmed, Azam, Ayesha, Tsang, Yee Wah, Kwak, Jin Tae, Rajpoot, Nasir M. (Nasir Mahmood), 2019. Hover-Net : simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Analysis, 58
- Maier-Hein, Lena, Eisenmann, Matthias, Reinke, Annika, Onogur, Sinan, Stankovic, Marko, Scholz, Patrick, Arbel, Tal, Bogunovic, Hrvoje, Bradley, Andrew P., Carass, Aaron, Feldmann, Carolin, Frangi, Alejandro F., Full, Peter M., van Ginneken, Bram, Hanbury, Allan, Honauer, Katrin, Kozubek, Michal, Landman, Bennett A., März, Keno, Maier, Oskar et al (Select to open full list), 2018. Why rankings of biomedical image analysis competitions should be interpreted with care. Nature Communications, 9 (1)
- Song, Tzu-Hsi, Sanchez Silva, Victor, ElDaly, Hesham, Rajpoot, Nasir M., 2018. Simultaneous cell detection and classification in bone marrow histology images. IEEE Journal of Biomedical and Health Informatics, pp. 1-1
- Qaiser, Talha, Mukherjee, A., Reddy Pb, C., Munugoti, S. D., Tallam, V., Pitkäaho, T., Lehtimäki, T., Naughton, T., Berseth, M., Pedraza, A., Mukundan, R., Smith, M., Bhalerao, Abhir, Rodner, E., Simon, M., Denzler, J., Huang, C.-H., Bueno, G., Snead, D., Ellis, I. et al (Select to open full list), 2018. Her2 Challenge Contest : a detailed assessment of automated Her2 scoring algorithms in whole slide images of breast cancer tissues. Histopathology, 72 (2), pp. 227-238
- Sirinukunwattana, Korsuk, Snead, David, Epstein, David M., Aftab, Zia, Mujeeb, Imaad, Tsang, Yee Wah, Cree, Ian, Rajpoot, Nasir M. (Nasir Mahmood), 2018. Novel digital signatures of tissue phenotypes for predicting distant metastasis in colorectal cancer. Scientific Reports, 8 (1)
- Sirinukunwattana, Korsuk, Snead, David, Epstein, D. B. A., Aftab, Zia, Mujeeb, Imaad, Tsang, Yee Wah, Cree, Ian A., Rajpoot, Nasir M., 2018. Novel digital signatures of tissue phenotypes for predicting distant metastasis in colorectal cancer. Scientific Reports, 8 (1)
- Mahmood, Arif, Small, Michael, Al-Maadeed, Somaya, Rajpoot, Nasir M., 2017. Using geodesic space density gradients for network community detection. IEEE Transactions on Knowledge and Data Engineering, 294 (4), pp. 921-935
- Trahearn, Nicholas, Tsang, Yee-Wah, Cree, Ian A., Snead, David, Epstein, D. B. A., Rajpoot, Nasir M., 2017. Simultaneous automatic scoring and co-registration of hormone receptors in tumour areas in whole slide images of breast cancer tissue slides. Cytometry Part A, 91 (6), pp. 585-594
- Alsubaie, Najah, Trahearn, Nicholas, Raza, Shan-e-Ahmed, Snead, David, Rajpoot, Nasir M., 2017. Stain deconvolution using statistical analysis of multi-resolution stain colour representation. PLoS One, 12 (1)
- Rezk, Eman, Awan, Zainab, Islam, Fahad, Jaoua, Ali, Al Maadeed, Somaya, Zhang, Nan, Das, Gautam, Rajpoot, Nasir M. (Nasir Mahmood), 2017. Conceptual data sampling for breast cancer histology image classification. Computers in Biology and Medicine, 89, pp. 59-67
- Ehteshami Bejnordi, Babak, Veta, Mitko, Johannes van Diest, Paul, van Ginneken, Bram, Karssemeijer, Nico, Litjens, Geert, van der Laak, Jeroen A. W. M., Hermsen, Meyke, Manson, Quirine F, Balkenhol, Maschenka, Geessink, Oscar, Stathonikos, Nikolaos, van Dijk, Marcory CRF, Bult, Peter, Beca, Francisco, Beck, Andrew H, Wang, Dayong, Khosla, Aditya, Gargeya, Rishab, Irshad, Humayun et al (Select to open full list), 2017. Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer. JAMA: The Journal of the American Medical Association, 318 (22)
- Song, Tzu-Hsi, Sanchez Silva, Victor, Eldaly, Hesham, Rajpoot, Nasir M., 2017. Dual-channel active contour model for megakaryocytic cell segmentation in bone marrow trephine histology images. IEEE Transactions on Biomedical Engineering, 64 (12), pp. 2913-2923
- Li, Guannan, Raza, Shan-e-Ahmed, Rajpoot, Nasir M., 2017. Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images. Medical Image Analysis, 37, pp. 91-100
- Trahearn, Nicholas, Epstein, D. B. A., Cree, Ian A., Snead, David, Rajpoot, Nasir M., 2017. Hyper-stain inspector : a framework for robust registration and localised co-expression analysis of multiple whole-slide images of serial histology sections. Scientific Reports, 7
- Rajpoot, Nasir M., Sirinukunwattana, Korsuk, 2017. Gland segmentation in colon histology images : the GlaS challenge contest. Medical Image Analysis, 35, pp. 489-502
- Xue, Mingzhan, Shafie, Alaa, Qaiser, Talha, Rajpoot, Nasir M., Kaltsas, Gregory, Gopalakrishnan, Kishore, Fisk, Adrian, Dimitriadis, Georgios K., Grammatopoulos, Dimitris, Rabbani, Naila, Thornalley, Paul J., Weickert, Martin O., James, Sean G., 2017. Glyoxalase 1 copy number variation in patients with well differentiated gastroentero-pancreatic neuroendocrine tumours (GEP-NET). Oncotarget, 8, pp. 76961-76973
- Awan, Ruqayya, Sirinukunwattana, Korsuk, Epstein, D. B. A., Jefferyes, Samuel, D. R., Qidwai, Uvais, Aftab, Zia, Mujeeb, Imaad, Snead, David R. J., Rajpoot, Nasir M., 2017. Glandular morphometrics for objective grading of colorectal adenocarcinoma histology images. Scientific Reports, 7
- Sirinukunwattana, Korsuk, Raza, Shan-e-Ahmed, Tsang, Yee-Wah, Snead, David, Cree, Ian A., Rajpoot, Nasir M., 2016. Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Transactions on Medical Imaging, 35 (5), pp. 1196-1206
- Raza, Shan-e-Ahmed, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, D. B. A., Nattkemper, Tim W., Rajpoot, Nasir M., 2016. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9 (11), pp. 1-13
- Snead, David R. J., Tsang, Yee-Wah, Meskiri, Aisha, Kimani, Peter K., Crossman, Richard, Rajpoot, Nasir M., Blessing, Elaine, Chen, Klaus, Gopalakrishnan, Kishore, Matthews, Paul, Momtahan, Navid, Read-Jones, Sarah, Sah, Shatrughan, Simmons, Emma, Sinha, Bidisa, Suortamo, Sari, Yeo, Yen, El Daly, Hesham, Cree, Ian A., 2016. Validation of digital pathology imaging for primary histopathological diagnosis. Histopathology, 68 (7), pp. 1063-1072
- Veta, Mitko, van Diest, Paul J., Willems, Stefan M., Wang, Haibo, Madabhushi, Anant, Cruz-Roa, Angel, Gonzalez, Fabio, Larsen, Anders B.L., Vestergaard, Jacob S., Dahl, Anders B., Ciresan, Dan C., Schmidhuber, Jürgen, Giusti, Alessandro, Gambardella, Luca M., Tek, F. Boray, Walter, Thomas, Wang, Ching-Wei, Kondo, Satoshi, Matuszewski, Bogdan J., Precioso, Frederic et al (Select to open full list), 2015. Assessment of algorithms for mitosis detection in breast cancer histopathology images. Medical Image Analysis, 20 (1), pp. 237-248
- Khan, Adnan M., Sirinukunwattana, Korsuk, Rajpoot, Nasir M., 2015. A global covariance descriptor for nuclear atypia scoring in breast histopathology images. IEEE Journal of Biomedical and Health Informatics, 19 (5), pp. 1637-1647
- Sirinukunwattana, Korsuk, Snead, David R. J., Rajpoot, Nasir M., 2015. A stochastic polygons model for glandular structures in colon histology images. IEEE Transactions on Medical Imaging, 34 (11), pp. 2366-2378
- Li, Guannan, Sanchez Silva, Victor, Quenby, Siobhan, Patel, Gauranga Jeram, Rajpoot, Nasir M., 2015. Localisation of luminal epithelium edge in digital histopathology images of IHC stained slides of endometrial biopsies. Computerized Medical Imaging and Graphics, 42, pp. 56-63
- Raza, Shan-e-Ahmed, Prince, Gillian, Clarkson, John P., Rajpoot, Nasir M., 2015. Automatic detection of diseased tomato plants using thermal and stereo visible light images. PLoS One, 10 (4)
- Raza, Shan-e-Ahmed, Sanchez Silva, Victor, Prince, Gillian, Clarkson, John P., Rajpoot, Nasir M., 2015. Registration of thermal and visible light images of diseased plants using silhouette extraction in the wavelet domain. Pattern Recognition, 48 (7), pp. 2119-2128
- Khan, Adnan M., Raza, Shan-e-Ahmed, Khan, Michael, Rajpoot, Nasir M., 2014. Cell phenotyping in multi-tag fluorescent bioimages. Neurocomputing, 134, pp. 254-261
- Khan, Adnan M., Rajpoot, Nasir M. (Nasir Mahmood), Treanor, Darren, Magee, Derek, 2014. A nonlinear mapping approach to stain normalization in digital histopathology images using image-specific color deconvolution. IEEE Transactions on Biomedical Engineering, 61 (6), pp. 1729-1738
- Raza, Shan-e-Ahmed, Smith, Hazel K., Clarkson, Graham J. J., Taylor, Gail, Thompson, Andrew J., Clarkson, John P., Rajpoot, Nasir M. (Nasir Mahmood), 2014. Automatic detection of regions in spinach canopies responding to soil moisture deficit using combined visible and thermal imagery. PLoS One, 9 (6)
- Kovacheva, Violeta N., Khan, Adnan M., Khan, Michael, Epstein, D. B. A., Rajpoot, Nasir M. (Nasir Mahmood), 2014. DiSWOP : a novel measure for cell-level protein network analysis in localized proteomics image data. Bioinformatics, 30 (3), pp. 420-427
- Sirinukunwattana, Korsuk, Savage, Richard S., Bari, Muhammad F., Snead, David R. J., Rajpoot, Nasir M., 2013. Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics. PLoS One, 8 (10)
- Evans, Robert G., Naidu, Babu, Rajpoot, Nasir M. (Nasir Mahmood), Epstein, D. B. A., Khan, Michael, 2012. Toponome imaging system : multiplex biomarkers in oncology. Trends in Molecular Medicine, Vol.18 (No.12), pp. 723-731
- McKenna, Stephen J., Magee, Derek, Rajpoot, Nasir M. (Nasir Mahmood), 2012. Special issue on microscopy image analysis for biomedical applications. Machine Vision and Applications, 23 (4), pp. 603-605
- Khan, Shahid, Reese, Thomas S., Rajpoot, Nasir M. (Nasir Mahmood), Shabbir, Ayisha, 2012. Spatiotemporal maps of CaMKII in dendritic spines. Journal of Computational Neuroscience, 33 (1), pp. 123-139
- Raza, Shan-e-Ahmed, Humayun, Ahmad, Abouna, Sylvie, Nattkemper, Tim W., Epstein, D. B. A., Khan, Michael, Rajpoot, Nasir M. (Nasir Mahmood), 2012. RAMTaB : robust alignment of multi-tag bioimages. PLoS One, Vol.7 (No.2)
- Rajpoot, Nasir M. (Nasir Mahmood), Butt, Irfan T., 2012. A multiresolution framework for local similarity based image denoising. Pattern Recognition, Vol.45 (No.8), pp. 2938-2951
- Kuse, Manohar, Wang, Yi-Fang, Kalasannavar, V, Khan, Michael, Rajpoot, Nasir M. (Nasir Mahmood), 2012. Local isotropic phase symmetry measure for detection of beta cells and lymphocytes. Journal of Pathology Informatics, Vol.2 (No.2)
- Qureshi, S. A., Mirza, S. M., Rajpoot, Nasir M. (Nasir Mahmood), Arif, Muhammad, 2011. Hybrid diversification operator-based evolutionary approach towards tomographic image reconstruction. IEEE Transactions on Image Processing, Vol.20 (No.7), pp. 1977-1990
- Arif, Muhammad, Rajpoot, Nasir M. (Nasir Mahmood), Nattkemper, Tim W., Technow, Ulrike, Chakraborty, Trinad, Fisch, Nicole, Jensen, Nickels A., Niehaus, Karsten, 2011. Quantification of cell infection caused by Listeria monocytogenes invasion. Journal of Biotechnology, Vol.154 (No.1), pp. 76-83
- Loyek, Christian, Rajpoot, Nasir M. (Nasir Mahmood), Khan, Michael, Nattkemper, Tim W., 2011. BioIMAX : a web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics, Vol.12 (No.1)
- Gurcan, Metin N., Boucheron, Laura E., Can, Ali, Madabhushi, Anant, Rajpoot, Nasir M., Yener, Bu¨lent, 2009. Histopathological image analysis : a review. IEEE Reviews in Biomedical Engineering, Vol.2, pp. 147-171
- Rajpoot, Nasir M. (Nasir Mahmood), Arif, Muhammad, 2008. Unsupervised shape clustering using diffusion map. Annals of the BMVA, 2008 (5)
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), 2008. Spatial analysis for colon biopsy classification from hyperspectral imagery. Annals of the BMVA, 2008 (4)
- Rajpoot, Nasir M., Wilson, Roland, Meyer, F. G., Coifman, R. R., 2004. Adaptive wavelet packet basis selection for zerotree image coding. IEEE Transactions on Image Processing, 12 (12), pp. 1460-1472
- Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood), Sahinalp, Suleyman Cenk, 2001. The effect of flexible parsing for dynamic dictionary based data compression. Journal of Experimental Algorithmics (JEA), 6, pp. 1-19
- 'Azarmehr, N., 'Shephard, Adam, 'Mahmood, H., 'Rajpoot, Nasir M. (Nasir Mahmood), 'Khurram, S. A., 2022. 'A neural architecture search based framework for segmentation of epithelium, nuclei and oral epithelial dysplasia grading. In Yang, G.; Aviles-Rivero, A.; Roberts, M.; Schönlieb, C. B. (eds.), Medical Image Understanding and Analysis. MIUA 2022, Cham, Springer New York LLC, pp. 357-370
- 'Bashir, Raja Muhammad Saad, 'Shaban, Muhammad, 'Raza, Shan E. Ahmed, 'Khurram, Syed Ali, 'Rajpoot, Nasir M. (Nasir Mahmood), 2022. 'A novel framework for coarse-grained semantic segmentation of whole-slide images. In Yang, G.; Aviles-Rivero, A.; Roberts, M.; Schönlieb, C. B. (eds.), Medical Image Understanding and Analysis.MIUA 2022, Cham, Springer International Publishing, pp. 425-439
- Zamanitajeddin, Neda, Jahanifar, Mostafa, Rajpoot, Nasir M. (Nasir Mahmood), 2021. Cells are actors : social network analysis with classical ML for SOTA histology image classification. In de Bruijne, Marleen; Cattin, Philippe C.; Cotin, Stéphane; Padoy, Nicolas; Speidel, Stefanie; Zheng, Yefeng; Essert, Caroline (eds.), Medical Image Computing and Computer Assisted Intervention ? MICCAI 2021, Cham, Springer International Publishing, pp. 288-298
- Shaban, Muhammad, Mahmood, Arif, Al-maadeed, Somaya, Rajpoot, Nasir M. (Nasir Mahmood), 2019. Multi-person head segmentation in low resolution crowd scenes using convolutional encoder-decoder framework. In Chen, L.; Ben Amor, B.; Ghorbel, F. (eds.), Representations, Analysis and Recognition of Shape and Motion from Imaging Data, Springer, pp. 82-92
- Rajpoot, Nasir M., Yao, Zhen, Wilson, Roland, 2009. Nonlinear filtering for image denoising. Chen, W. K. (ed.), Passive, Active, and Digital Filters (Circuits and Filters Handbook, 3rd Edition), Boca Raton, FL, CRC Press
- Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood), Noble, J., 2008. Discrete wavelet diffusion for image denoising. In Elmoataz, A.; Lezoray, O.; Nouboud, F.; Mammass, D. (eds.), Image and signal processing, Springer-Verlag, pp. 20-28
- Bowen, Adam, Mullins, Andrew, Wilson, Roland, Rajpoot, Nasir M., 2008. Estimation of dense, non-rigid motion fields from a multi-camera array using a hierarchical mixture model. In Perales, F. J.; Fisher, R. B. (eds.), Articulated motion and deformable objects, Springer-Verlag, pp. 11-21
- Qureshi, Hammad A., Sertel, O., Rajpoot, Nasir M., Wilson, Roland, 2008. Adaptive discriminant wavelet packet transform and local binary patterns for meningioma subtype classification. In Metaxas, D.; Axel, L.; Fichtinger, G.; Szekely, G. (eds.), Medical image computing and computer-assisted intervention ? MICCAI 2008, Springer-Verlag, pp. 196-204
- Yao, Zhen, Rajpoot, Nasir M., Wilson, Roland, 2007. Directional wavelet analysis with Fourier-type bases for image processing. In Tao, Q.; Mang, V.; Xu, Y. (eds.), Wavelet Analysis and Applications, Birkhäuser Basel, pp. 123-142
- Bowen, Adam, Mullins, Andew, Wilson, Roland, Rajpoot, Nasir M., 2005. Light field reconstruction using a planar patch model. In Kalviainen, H.; Parkkinen, J.; Kaarna, A. (eds.), Image Analysis, Springer Berlin Heidelberg, pp. 85-94
- Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood), 2004. SVM optimization for hyperspectral colon tissue cell classification. In Barillot, C.; Haynor, D. R.; Hellier, P. (eds.), Medical Image Computing and Computer-Assisted Intervention ? MICCAI 2004, Springer Berlin Heidelberg, pp. 829-837
- Langenkamper, D., Kolling, J., Humayun, A., Abouna, Sylvie, Epstein, D. B. A., Khan, Michael, Rajpoot, Nasir M. (Nasir Mahmood), Nattkemper, Tim W.. Towards Protein Network Analyis using TIS Imaging and Exploratory Data Analysis. 8th International Workshop on Computational Systems Biology, Zürich, Switzerland, June 6-8, 201, Published in Proceeding of the 8th International Workshop on Computational Systems Biology, pp. 109-113
- Xu, Kesi, Jahanifar, Mostafa, Graham, Simon, Rajpoot, Nasir M. (Nasir Mahmood), 2023. Accurate segmentation of nuclear instances using a double-stage neural network. Medical Imaging 2023: Digital and Computational Pathology, Published in Proceedings of SPIE - International Society for Optical Engineering
- 'Minhas, Fayyaz, 'Toss, Michael S., 'Wahab, Noor ul, 'Rakha, Emad, 'Rajpoot, Nasir M., 2022. 'L1-regularized neural ranking for risk stratification and its application to prediction of time to distant metastasis in luminal node negative chemotherapy na?ve breast cancer patients. Joint European Conference on Machine Learning and Knowledge Discovery in Databases, Online, 13-17 Sep 2021, Published in Proceedings of the ECML PKDD 2021: Machine Learning and Principles and Practice of Knowledge Discovery in Databases, pp. 390-400
- 'Jahanifar, Mostafa, 'Shephard, Adam, 'Zamanitajeddin, Neda, 'Bashir, R. M. Saad, 'Bilal, Mohsin, 'Khurram, Syed Ali, 'Minhas, Fayyaz, 'Rajpoot, Nasir, 2022. 'Stain-robust mitotic figure detection for the mitosis domain generalization challenge. International Conference on Medical Image Computing and Computer-Assisted Intervention, Strasbourg, France, 27 Sep-01 Oct 2021, Published in Biomedical Image Registration, Domain Generalisation and Out-of-Distribution Analysis, pp. 48-52
- Dawood, Muhammad, Branson, Kim, Rajpoot, Nasir M., Minhas, Fayyaz ul Amir Afsar, 2022. All you need is color : image based spatial gene expression prediction using neural stain learning. Joint European Conference on Machine Learning and Knowledge Discovery in Databases, Published in Machine Learning and Principles and Practice of Knowledge Discovery in Databases. ECML PKDD 2021, pp. 437-450
- 'Jahanifar, Mostafa, 'Tajeddin, Neda Zamani, 'Koohbanani, Navid Alemi, 'Rajpoot, Nasir M. (Nasir Mahmood), 2021. 'Robust interactive semantic segmentation of pathology images with minimal user input. 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), Montreal, BC, Canada, 11-17 Oct 2021, Published in 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), pp. 674-683
- Dawood, Muhammad, Branson, Kim, Rajpoot, Nasir M., Minhas, Fayyaz ul Amir Afsar, 2021. ALBRT : cellular composition prediction in routine histology images. IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), Montreal, BC, Canada, 11-17 Oct 2021, pp. 664-673
- Idrees, Haroon, Tayyab, Muhmmad, Athrey, Kishan, Zhang, Dong, Al-Maadeed, Somaya, Rajpoot, Nasir, Shah, Mubarak, 2018. Composition loss for counting, density map estimation and localization in dense crowds. European Conference on Computer Vision, Munich, Germany, 8-14 Sept 2018, Published in Computer Vision ? ECCV 2018, pp. 544-559
- Graham, Simon, Chen, Hao, Dou, Qi, Heng, Pheng-Ann, Rajpoot, Nasir M. (Nasir Mahmood), 2018. MILD-Net : minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Imaging with Deep Learning (MIDL), Amsterdam, 4-6 Jul 2018
- Tomaszewski, John E., Gurcan, Metin N., Rajpoot, Nasir M. (Nasir Mahmood), Qaiser, Talha, Shaban, Muhammad, Graham, Simon, Khurram, Syed Ali, 2018. Classification of lung cancer histology images using patch-level summary statistics. SPIE Medical Imaging, Houston, Texas, United States, 2/10/2018 - 2/15/2018, Published in Proceedings Volume 10581, Medical Imaging 2018: Digital Pathology
- Qaiser, Talha, Tsang, Yee-Wah, Epstein, D. B. A., Rajpoot, Nasir M., 2017. Tumor segmentation in whole slide images using persistent homology and deep convolutional features. Medical Image Understanding and Analysis (MIUA 2017), Edinburgh, 11-12 July 2017, Published in Communications in Computer and Information Science, pp. 320-329
- Qaiser, Talha, Sirinukunwattana, Korsuk, Nakane, Kazuaki, Tsang, Yee-Wah, Epstein, D. B. A., Rajpoot, Nasir M., 2016. Persistent homology for fast tumor segmentation in whole slide histology images. Medical Image Understanding and Analysis (MIUA 2016), Loughborough, UK, 6-8 July 2016, Published in Procedia Computer Science, pp. 119-124
- Khan, Adnan M., Mohammed, Aisha F., Al-Hajri, Shama A., Shamari, Hajer M. Al, Qidwai, Uvais, Mujeeb, Imaad, Rajpoot, Nasir M. (Nasir Mahmood), 2014. A novel system for scoring of hormone receptors in breast cancer histopathology slides. 2014 Middle East Conference on Biomedical Engineering (MECBME), Dohar, Qatar, 17-20 Feb 2014, Published in Proceedings of 2014 Middle East Conference on Biomedical Engineering (MECBME), pp. 155-158
- Trahearn, Nicholas, Snead, David R. J., Epstein, D. B. A., Cree, Ian A., Rajpoot, Nasir M. (Nasir Mahmood), 2014. A fast method for approximate registration of whole-slide images of serial sections using local curvature. Medical Imaging 2014: Digital Pathology, San Diego, California, USA, February 15, 2014, Published in SPIE Proceedings
- Kovacheva, Violeta N., Sirinukunwattana, Korsuk, Rajpoot, Nasir M., 2014. A bayesian framework for cell-level protein network analysis for multivariate proteomics image data. Medical Imaging 2014: Digital Pathology, San Diego, California, USA, February 15, 2014, Published in SPIE Proceedings
- Jefferyes, Samuel, D. R., Epstein, D. B. A., Straube, Anne, Rajpoot, Nasir M. (Nasir Mahmood), 2013. A novel framework for exploratory analysis of highly variable morphology of migrating epithelial cells. 2013 35TH Annual International Conference of The IEEE Engineering in Medicine and Biology Society (EMBC), Osaka, 3-7 July 2013, pp. 3463-3466
- Khan, Adnan M., El-Daly, H., Rajpoot, Nasir M. (Nasir Mahmood), 2012. A Gamma-Gaussian mixture model for detection of mitotic cells in breast cancer histopathology images. 21st International Conference on Pattern Recognition (ICPR), Tsukuba, Japan, 11-15 November, 2012, Published in Proceedings - International Conference on Pattern Recognition, pp. 149-152
- Humayun, A., Raza, Shan-e-Ahmed, Waddington, C., Abouna, Sylvie, Khan, Michael, Rajpoot, Nasir M. (Nasir Mahmood), 2011. A novel framework for molecular co-expression pattern analysis in multi-channel toponome fluorescence images. MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011, Published in Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology
- Qureshi, Hammad A., Rajpoot, Nasir M. (Nasir Mahmood), 2010. Comparative analysis of spatial and transform domain methods for meningioma subtype classification. Medical Image Understanding and Analysis (MIUA 2010), Coventry, UK, 6-7 July 2010, Published in Proceedings of Medical Image Understanding and Analysis 2010, pp. 209-213
- Gurcan, M. N., Madabhushi, A., Rajpoot, Nasir M. (Nasir Mahmood), 2010. Pattern recognition in histopathological images : an ICPR 2010 contest. International Conference on Pattern Recognition (ICPR 2010), Istanbul, Turkey, 23-26 August, 2010
- Butt, I., Rajpoot, Nasir M. (Nasir Mahmood), 2009. Multilateral filtering : a novel framework for generic similarity-based image denoising. 16th IEEE International Conference on Image Processing (ICIP 2009), Cairo, Egypt, 7-10 Nov, 2009, Published in 16th IEEE International Conference on Image Processing (ICIP 2009), pp. 2981-2984
- Qureshi, Hammad A., Rajpoot, Nasir M. (Nasir Mahmood), Nattkemper, Tim W., Hans, Volkmar, 2009. A robust adaptive wavelet-based method for classification of meningioma histology images. Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy (OPTIMHisE), London, UK, 20-24 Sept 2009, pp. 31-42
- Murtaza, Kashif, Khan, Sohaib, Rajpoot, Nasir M. (Nasir Mahmood), 2009. VillageFinder : segmentation of nucleated villages in satellite imagery. British Machine Vision Conference (BMVC 2009), London, 7-10 Sept 2009
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), 2009. Texture based classification of hyperspectral colon biopsy samples using CLBP. IEEE Internaional Symposium on Biomedical Imaging - From Nano to Macro, Boston, MA, June 28-July 01, 2009, Published in 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, pp. 1011-1014
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), 2009. Texture based classification of hyperspectral colon biopsy samples using CLBP. 6th IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, MA, 28 Jun -1 Jul 2009, Published in IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09, pp. 1011-1014
- Rajpoot, Kashif, Noble, Alison, Grau, Vicente, Rajpoot, Nasir M. (Nasir Mahmood), 2008. Feature detection from echocardiography images using local phase information. 12th Medical Image Understanding and Analysis (MIUA 2008), Dundee, Scotland, 2-3 Jul 2008
- Herold, Julia, Friedenberger, Manuela, Bode, Marcus, Rajpoot, Nasir M. (Nasir Mahmood), Schubert, Walter, Nattkemper, Tim W., 2008. Flexible synapse detection in fluorescence micrographs by modeling human expert grading. 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, 14-17 May 2008, Published in 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, pp. 1347-1350
- Qureshi, Hammad A., Wilson, Roland, Rajpoot, Nasir M., 2008. Optimal wavelet basis for wavelet packets based meningioma subtype classification. 12th Medical Image Understanding and Analysis (MIUA 2008), Dundee, Scotland, 2-3 Jul 2008
- Wilson, Roland, Bowen, Adam, Mullins, Andrew, Rajpoot, Nasir M., 2008. Estimation of a 3D motion field from a multi-camera array using a multiresolution Gaussian mixture model. Workshop on Multi-camera and Multi-modal Sensor Fusion: Algorithms and Applications, Marseille, France, 18 Oct 2008
- Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood), Sahinalp, Suleyman Cenk, 2008. Implementation and experimental evaluation of flexible parsing for dynamic dictionary based data compression. 2nd Workshop on Algorithm Engineering (WAE 1998), Saarbrucken, Germany, 20-22 Aug 2008, Published in Proceedings WAE?98
- Arif, M., Rajpoot, Nasir M. (Nasir Mahmood), 2007. Classification of potential nuclei in histology images using shape manifold learning. International Conference on Machine Vision (ICMV 2007), Islamabad, Pakistan, 28-29 Dec 2007, Published in International Conference on Machine Vision, 2007. ICMV 2007, pp. 113-118
- Qureshi, Hammad A., Rajpoot, Nasir M., Wilson, Roland, Nattkemper, Tim W., Hans, Volkmar, 2007. Comparative analysis of discriminant wavelet packet features and raw image features for classification of meningioma subtypes. 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 Jul 2007
- Bowen, Adam, Mullins, Andrew, Wilson, Roland, Rajpoot, Nasir M., 2007. Surface estimation and tracking using sequential MCMC methods for video based rendering. IEEE International Conference on Image Processing (ICIP 2007), San Antonio, TX, 16-19 Sep 2007, Published in IEEE International Conference on Image Processing, 2007. ICIP 2007, pp. 561-564
- Arif, Muhammad, Rajpoot, Nasir M. (Nasir Mahmood), 2007. Detection of nuclei by unsupervised manifold learning. 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 July, 2007
- Rajpoot, Nasir M. (Nasir Mahmood), Arif, Muhammad, Bhalerao, Abhir, 2007. Unsupervised learning of shape manifolds. British Machine Vision Conference (BMVC 2007), Coventry, UK, 10-13 Sep 2007, Published in Proceedings of the British Machine Conference
- Mullins, Andrew, Bowen, Adam, Wilson, Roland, Rajpoot, Nasir M., 2007. Video based rendering using surfaces patches. 1st International Conference on 3DTV, Kos Isl, Greece, 07-09 May 2007, Published in 2007 3DTV Conference, pp. 338-341
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), 2007. Classification of colon biopsy samples by spatial analysis of a single spectral band from its hyperspectral cube. 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 Jul 2007
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Qureshi, Hammad A., Rajpoot, Kashif, 2007. Hyperspectral texture analysis for colon tissue biopsy classification. International Symposium on Health Informatics and Bioinformatics (HIBIT 2007), Antalya, Turkey, 30 Apr - May 2 2007
- Mullins, Andrew, Bowen, Adam, Wilson, Roland, Rajpoot, Nasir M., 2007. Bayesian surface estimation from multiple cameras using a prior based on the visual hull and its application to image based rendering. British Machine Vision Conference (BMVC 2007), Coventry, UK, 10-13 Sep 2007
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Qureshi, Hammad A., Rajpoot, Kashif, 2006. Co-occurrence and morphological analysis for colon tissue biopsy classification. 4th International Workshop on Frontiers of Information Technology (FIT 2006), Islamabad, Pakistan, 20-21 Dec 2006
- Mullins, Andrew, Bowen, Adam, Wilson, Roland, Rajpoot, Nasir M., 2006. Multiresolution particle filters in image processing. 7th International Conference on Mathematics in Signal Processing, Cirencester, UK, 18-20 Dec 2006
- Hussain, Arshad, Rajpoot, Nasir M., Rajpoot, Kashif, 2006. Texture classification with ants. IEEE International Conference on Image Processing (ICIP 2006), Georgia, USA, 8-11 Oct 2006, Published in 2006 IEEE International Conference on Image Processing, pp. 3013-3016
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Rajpoot, Kashif, Qureshi, Hammad A., 2006. Hyperspectral colon tissue classification using morphological analysis. 2nd International Conference on Emerging Technologies, Peshawar, PAKISTAN, NOV 13-14, 2006, Published in Second International Conference on Emerging Technologies 2006, Proceedings, pp. 735-741
- Mullins, Andrew, Bowen, Adam, Wilson, Roland, Rajpoot, Nasir M., 2006. Scene reconstruction from multiple views using a locally planar model. Vision, Modeling and Visualisation (VMV 2006), Aachen, Germany, 22-24 Nov 2006
- Qureshi, H., Rajpoot, Nasir M. (Nasir Mahmood), Masood, K., Hans, V., 2006. Classification of meningiomas using discriminant wavelet packets and learning vector quantization. Medical Image Understanding and Analysis (MIUA 2006), Manchester, UK, 4-5 Jul 2006
- Channa, A., Rajpoot, Nasir M. (Nasir Mahmood), Rajpoot, Kashif, 2006. Texture segmentation using ant tree clustering. IEEE International Conference on Engineering of Intelligent Systems (ICEIS 2006), Islamabad, Pakistan, 14-15 Jan 2006, Published in 2006 IEEE International Conference on Engineering of Intelligent Systems, pp. 1-6
- Mullins, Andrew, Bowen, Adam, Wilson, Roland, Rajpoot, Nasir M., 2005. Estimating planar patches for light field reconstruction. British Machine Vision Conference (BMVC 2005), Oxford, UK, 5-8 Sep 2005, Published in Proceedings of the British Machine Vision Conference 2005
- Zhen, Yao, Rajpoot, Nasir M. (Nasir Mahmood), 2005. Image denoising using multiscale directional cosine bases. IEEE International Conference on Image Processing (ICIP 2005), Genoa, Italy, 11-14 Sep 2005, Published in IEEE International Conference on Image Processing, 2005. ICIP 2005, pp. 313-316
- Rajpoot, Nasir M. (Nasir Mahmood), Masood, K., 2005. Human gait recognition with 3-D wavelets and kernel based subspace projections. International Workshop on Human Activity Recognition and Modelling (HAREM 2005), Oxford, UK, 9 Sep 2005
- Bowen, Adam, Mullins, Andrew, Rajpoot, Nasir M., Wilson, Roland, 2005. Photo-consistency and multiresolution methods for light field disparity estimation. IEE International Conference on Visual Information Engineering (VIE 2005), Glasgow, UK, 4-6 Apr 2005
- Rajpoot, Nasir M., Hussain, Arshad, Ali, Usman, Saleem, Kashif, Qureshi, Mahmud, 2004. A novel image coding algorithm using ant colony system vector quantization. International Workshop on Systems, Signals and Image Processing (IWSSIP 2004), Poznan, Poland, 13-15 Sep 2004
- Rajpoot, Nasir M. (Nasir Mahmood), 2004. Model based optimal bit allocation. Data Compression Conference (DCC 2004), Snowbird, UT, 23-25 Mar 2004, Published in Data Compression Conference, 2004. Proceedings. DCC 2004, pp. 558-558
- Rajpoot, Nasir M., Wilson, Roland, Yao, Zhen, 2004. Planelets : a new analysis tool for planar feature extraction. International Workshop on Image Analysis for Multimedia Interactive Services (5th), Lisboa, Portugal, 21-23 Apr 2004
- Yao, Zhen, Rajpoot, Nasir M., 2004. Radon/ridgelet signature for image authentication. International Conference on Image Processing (ICIP 2004), Singapore, 24-27 Oct 2004, Published in 2004 International Conference on Image Processing, 2004. ICIP '04, pp. 43-46
- Rajpoot, Nasir M., Yao, Zhen, Wilson, Roland, 2004. Adaptive wavelet restoration of noisy video sequences. International Conference on Image Processing (ICIP 2004), Singapore, 24-27 Oct 2004, Published in 2004 International Conference on Image Processing, 2004. ICIP '04, pp. 957-960
- Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood), Turner, Martin J., 2004. Hyperspectral colon tissue cell classification. SPIE Medical Imaging (MI), US, 2004
- Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood), 2004. Wavelets and support vector machines for texture classification. 8th IEEE International Multitopic Conference (INMIC 2004), Lahore, Pakistan, 24-26 Dec 2004, Published in Proceedings of INMIC 2004. 8th International Multitopic Conference, 2004, pp. 328-333
- Awan, A. Majid, Rajpoot, Nasir M. (Nasir Mahmood), Husain, S. Afaq, 2003. Stack-run adaptive wavelet image compression. IEEE Data Compression Conference (2003), Utah, US, 25-27 Mar 2003, Published in DCC 2003 : proceedings : Data Compression Conference : March 25-27, 2003, Snowbird, Utah, pp. 414-414
- Bhalerao, Abhir, Rajpoot, Nasir M. (Nasir Mahmood), 2003. Discriminant feature selection for texture classification. British Machine Vision Conference (BMVC 2003), Norwich, UK, Published in Proceedings for the British Machine Vision Conference 2003
- Rajpoot, Nasir M. (Nasir Mahmood), 2003. Local discriminant wavelet packet basis for texture classification. Wavelets - Applications in Signal and Image Processing X Conference, San Diego, CA, 04-08 Aug 2003, Published in Wavelets: Applications in Signal and Image Processing X. SPIE Proceedings, pp. 774-783
- Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood), 2003. Wavelet based segmentation of hyperspectral colon tissue imagery. 7th IEEE International Multi Topic Conference (INMIC 2003), Islamabad, Pakistan, 9 Dec 2003, Published in 7th International Multi Topic Conference, 2003. INMIC 2003, pp. 38-43
- Wilson, Roland, Rajpoot, Nasir M., 2003. Image volume denoising using a Fourier-wavelet basis. 6th Baiona Workshop on Signal Processing in Communications (Baiona SPC 2003), Baiona, Spain, Sep 2003
- Rajpoot, Nasir M. (Nasir Mahmood), 2002. Simulation of the rate-distortion behaviour of a memoryless Laplacian source. 4th Middle Eastern Symposium on Simulation and Modelling (MESM 2002), Sharjah, UAE, 28-30 Oct 2002
- Yao, Zhen, Rajpoot, Nasir M., 2002. Less redundant codes for variable size dictionaries. IEEE Data Compression Conference (DCC 2002), Utah, US, 2-4 Apr 2002, Published in Proceedings DCC 2002 : data compression conference, pp. 481-481
- Rajpoot, Nasir M. (Nasir Mahmood), 2002. Texture classification using discriminant wavelet packet subbands. 45th Midwest Symposium on Circuits and Systems (MWSCAS 2002), Tulsa, OK, 04-07 Aug 2002, Published in The 2002 45th Midwest Symposium on Circuits and Systems : conference proceedings : August 4-7, 2002, Tulsa, Oklahoma, pp. 300-303
- Rajpoot, Nasir M., Wilson, Roland, Meyer, François G., Coifman, Ronald R., 2001. A new basis selection paradigm for wavelet packet image coding. International Conference on Image Processing (ICIP 2001), Thessaloniki, Greece, 07-10 Oct 2001, Published in Proceedings. 2001 International Conference on Image Processing, 2001, pp. 816-819
- Rajpoot, Nasir M., Meyer, F. G., Wilson, Roland, Coifman, R. R., 1999. On zerotree quantization for embedded wavelet packet image coding. IEEE International Conference on Image Processing (ICIP 1999), Kobe, Japan, 24-28 Oct 1999, Published in 1999 International Conference on Image Processing, 1999. ICIP 99. Proceedings, pp. 283-287
- Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood), Sahinalp, Suleyman Cenk, 1999. The effect of flexible parsing for dynamic dictionary based data compression. IEEE Data Compression Conference (DCC 1999), Utah, US, 29-31 Mar 1999, Published in Proceedings. Data Compression Conference, 1999, pp. 238-246
- Wang, Liang, Zhao, Gouying, Rajpoot, Nasir M., Nixon, Mark S., 2010. Special issue on new advances in video-based gait analysis and applications : challenges and solutions. IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics, IEEE, pp. 982-985
- Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), 2006. Hyperspectral colon biopsy classification into normal and malignant categories. University of Warwick. Department of Computer Science
- Rajpoot, Nasir M. (Nasir Mahmood), 2004. Model based optimal bit allocation. University of Warwick. Department of Computer Science
- Rajpoot, Nasir M. (Nasir Mahmood), 2001. Adaptive wavelet image compression.
- Rajpoot, Nasir M., Wilson, Roland, 1998. Progressive image coding using augmented zerotrees of wavelet coefficients. University of Warwick. Department of Computer Science
| Title | Funder | Award start | Award end |
|---|---|---|---|
| COBIx: Multi-site validation of automated AI tool for screening of large bowel endoscopic biopsy slides | National Institute for Health Research (NIHR DoH) | 01 Apr 2023 | 31 Mar 2026 |
| BIGPICTURE | European Research Council (ERC) | 01 Feb 2021 | 31 Jan 2026 |
| Studentship with AstraZeneca on Investigate and Mitigate the Impact of Domain Shift factors for Hematoxylin & Eosin Stained Histology Images | AstraZeneca UK Limited | 01 Mar 2022 | 31 Aug 2025 |
| Robustness & Generalisability of DL Algorithms for Histology Images - Studentship with GSK | GlaxoSmithKline Research and Development Ltd | 17 Jan 2023 | 16 Jul 2025 |
| GSK Chair Agreement | GlaxoSmithKline Research and Development Ltd | 01 Dec 2022 | 31 May 2025 |
| ANTICIPATE- Artificial Intelligence to improve Classification and Predict Malignant Transformation of Oral Epithelial Dysplasia | Cancer Research UK | 01 Oct 2020 | 31 Jan 2025 |
| PathLake Plus Follow on | Innovate UK | 01 Jan 2022 | 16 Oct 2024 |
| Driving system-wide improvements with real world health economics evidence and subspecialist-led adoption cguidelines for full workflow implementation of AI with Paige Prostate cancer detection, grading and quantification tool in Cellular Pathology Departments. | NHSX | 01 Sep 2021 | 29 Aug 2024 |
| Studentship from Coventry General Charities - student Ruyou Wang | Coventry General Charities | 05 Oct 2020 | 04 Apr 2024 |
| MSInRed: Digital Pathology and AI based Association and Integration of Histological and Molecular Fingerprints of Microsatellite Instability in Colorectal Cancer | UK Research and Innovation | 26 Sep 2022 | 31 Mar 2024 |
| Warwick-KU Collaboration on Domain-Invariant Artificial Intelligence for Robust Analysis of Pathology Images | MRC | 01 Dec 2021 | 31 Mar 2024 |
| Developing Predictive Biomarkers for Oesophageal Adenocarcinomas using AI based Profiling of Digital Histology Slides | Royal Marsden NHS Foundation Trust, The | 01 Apr 2019 | 30 Jun 2023 |
| PathLEAD: Pathology image data Lake for Education, Analytics, and Discovery | Innovate UK | 01 Jan 2019 | 31 Mar 2023 |
| PathLEAD:?Pathology image data Lake for Education, Analytics and Discovery (6 months costed extension to IDEATE 59254) | Innovate UK | 01 Apr 2022 | 30 Sep 2022 |
| Royal Society Wolfson Research Merit Award: Learning Rules and Motifs of Tumour Microenvironments | Royal Society | 01 Sep 2017 | 31 Aug 2022 |
| Multi-centred validation of digital whole slide imaging for routine diagnosis. | National Institute for Health Research (DoH) | 01 Nov 2018 | 30 Apr 2022 |
| WMHTC Strategic Partnership Agreement | West Midlands Health Technologies Cluster Limited | 01 Jul 2021 | 31 Mar 2022 |
| PathLAKE Plus | Innovate UK | 26 Mar 2021 | 31 Dec 2021 |
| Validating the PredicTR treatment response classifier for oropharyngeal cancer (PredicTR 2) | MRC | 01 Mar 2019 | 30 Nov 2021 |
| MathSys CDT Studentship - Student Jivgenij Gamper Title:tbc | PathXL Ltd | 01 Oct 2017 | 30 Sep 2021 |
| Hard-ware level accelerated deep learning for faster recognition of cancer cells in pathology images | Alan Turing Institute | 01 Oct 2019 | 31 Dec 2020 |
| To develop algorithms for a Digital Pathology appliance used for pre-diagnostic analytics for computer-assisted grading of lung cancer | Alan Turing Institute | 01 May 2017 | 31 Oct 2020 |
| Alan Turing Institute Fellowship 2020 for 1 year Cont Prev Proposal 56473 | Alan Turing Institute | 01 Oct 2019 | 30 Sep 2020 |
| Developing Micro-Community Analytics for Histology Landscapes (MiCAHiL) | MRC | 16 Jan 2017 | 31 Aug 2020 |
| ATI Turing Fellowship (TF) | Alan Turing Institute | 01 Oct 2017 | 30 Sep 2019 |
| Persistent Homology and Machine Learning for Analysis of Colorectal Cancer Histology Images | Osaka University | 03 Jun 2015 | 31 Mar 2019 |
| N?ewton-Bhabha Placement Programme 2017-18 for Dr Monjoy Saha: Microscopic Image Analytics for Screening and Prognostic Evaluation of Breast Cancer | British Council | 15 Feb 2018 | 14 Mar 2019 |
| Novel Image Analytics for Improved Oral Cancer Stratification | Alan Turing Institute | 15 Feb 2018 | 14 Feb 2019 |
| Taiwan Partnering Award for the Analysis of Digitised Images of Immunohistochemically (IHC) Stained Serial Tissue Sections of Mouse Pancreata | BBSRC | 01 May 2016 | 30 Apr 2018 |
| Subproject for Institution # 34480 Origin of new beta cells during pregnancy using PCLT and TIS microscopy | BBSRC | 01 May 2013 | 31 Oct 2017 |
| Origin of new beta cells during pregnancy using PCLT and TIS microscopy | BBSRC | 01 May 2013 | 31 Oct 2017 |
| A Pilot Software System for Computer-Assisted Grading of Breast Cancer | University Hospitals Coventry and Warwickshire NHS Trust | 01 May 2015 | 30 Apr 2017 |
| IHC Stained Slides of Serial Sections (PhD) | Omnyx LLC | 01 Jan 2013 | 30 Jun 2016 |
| To create algorithms and test/train to identify the lesions in parsnips caused by pathogens | Elsoms Seeds Limited | 01 Jul 2014 | 30 Sep 2014 |
| HDC Studentship: Continued Thermal and Visual Image Analysis for Crop Scanning and Crop Disease Monitoring | AHDB (Formerly HDC) | 14 Mar 2011 | 13 Mar 2014 |
| Novel Prognostic Biomarkers for Colorectal Cancer via Computerized Analysis of Highly Multiplexed Protein Fluorescence Image Data | Qatar National Research Fund | 01 Oct 2012 | 30 Sep 2013 |
| MIRACLE - Microscopic Image Processing Anaysis, Classification and Modelling Environment | EU | 01 May 2010 | 30 Apr 2013 |
| Multichannel Microscopy, Applied to 1) Colon Cancer 2) Beta Cell Regeneration | Royal Society | 16 Mar 2011 | 15 Mar 2013 |
| Virtual Eyes: Estimation and coding of dynamic light fields | EPSRC | 01 Jun 2004 | 31 May 2007 |
