Papers using QuimP

• Pal Debadrita, Ellis Andrea, Sepúlveda-Ramírez Silvia P., Salgado Torey, Terrazas Isabella, Reyes Gabriela, De La Rosa Richard, Henson John H., Shuster Charles B. Rac and Arp2/3-Nucleated Actin Networks Antagonize Rho During Mitotic and Meiotic Cleavages. Frontiers in Cell and Developmental Biology, 8, 1298, 2020, DOI=10.3389/fcell.2020.591141 

• Pablo Rougerie, Laurent Pieuchot, Rafaela Silva dos Santos, Julie Marteau, Maxence Bigerelle, Pierre-François Chauvy, Marcos Farina & Karine Anselme. Topographical curvature is sufficient to control epithelium elongation. Scientific Reports 10, 14784, 2020.

• Olga Ramaniuk , Zuzana Klímová, Tomáš Groušl and Tomáš Vomastek. Quantitative Phase Imaging of Spreading Fibroblasts Identifies the Role of Focal Adhesion Kinase in the Stabilization of the Cell Rear. Biomolecules 2020, 10(8), 1089; https://doi.org/10.3390/biom1008108
• Muhammad M. Hasan, José E. Teixeira, Ying-Wai Lam, Christopher D. Huston. Coactosin Phosphorylation Controls Entamoeba histolytica Cell Membrane Protrusions and Cell Motility, mBio 11(4), 2020. DOI: 10.1128/mBio.00660-20

• Mccormick, B., Craig, H. E., Chu, J. Y., ... , Vermeren, S.. A Negative Feedback Loop Regulates Integrin Inactivation and Promotes Neutrophil Recruitment to Inflammatory Sites. The Journal of Immunology. August 2019. (doi: 10.4049/jimmunol.1900443)
• Sahgal P., Alanko J., Icha J., Paatero I., Hamidi H., Arjonen A., Pietilä M., Rokka A., Ivaska J. GGA2 and RAB13 promote activity-dependent β1-integrin recycling. J Cell Sci. 7;132(11). pii: jcs233387 2019. (doi: 10.1242/jcs.233387).
• Paul P., Thomas J. R., Maldonado H., Wolanska K. I, Koper E., Humphries J. D., Byron A., George A., Allen N., Prior I., Streuli C., Humphries M., Morgan M. R. Eps8 is a convergence point integrating EGFR and integrin trafficking and crosstalk. bioRxiv, 405043, 2018. (doi: 10.1101/405043)
• Jagla C. A. D., Scott C. E., Tang Y., Qiao C., Mateo-Semidey G. E., Yudowski G. A., Lu D., Kendall D. A. Pyrimidinyl Biphenylureas Act as Allosteric Modulators to activate Cannabinoid Receptor 1 and initiate β-Arrestin-dependent Responses. Molecular Pharmacology, October, 2018. (doi: 10.1124/mol.118.112854)
• Marinovic M., Xiong H., Rivero F., Weber I. (2018). Assaying Rho GTPase-Dependent Processes in Dictyostelium discoideum. In F. Rivero (Ed.), Rho GTPases. Methods in Molecular Biology, Vol. 1821. Humana Press, New York, NY. (doi: 978-1-4939-8612-5_25)
• Riani, Y. D., Matsuda, T., Takemoto, K., Nagai, T. Green monomeric photosensitizing fluorescent protein for photo-inducible protein inactivation and cell ablation. BMC Biology, 16(1), 2018. (doi: 10.1186/s12915-018-0514-7)
• McKenzie, A. J., Williams, T. F., Svec, K. V., Howe, A. K. Protein Kinase A activity is regulated by actomyosin contractility during cell migration and is required for durotaxis. bioRxiv 392399; (doi: 10.1101/392399)
• Carisey, A. F., Mace, E. M., Saeed, M. B., Davis, D. M., & Orange, J. S. Nanoscale Dynamism of Actin Enables Secretory Function in Cytolytic Cells. Current Biology, 2018. (doi: 10.1016/j.cub.2017.12.044)
• http://chloridechannels.com/a-key-feature-of-directed-cell-movement-is-the-ability-of/. Feb. 2018. Accessed Apr. 2019
• Hoyle N.P., Seinkmane E., Putker M., Feeney K.A., Krogager T.P., Chesham J.E., Bray L.K., Thomas J.M., Dunn K., Blaikley J., O'Neill J.S. Circadian actin dynamics drive rhythmic fibroblast mobilization during wound healing. Sci Transl Med., 9(415), 2017. (doi: 10.1126/scitranslmed.aal2774)
• Collier, S., Paschke, P., Kay, R. R., & Bretschneider, T. Image based modeling of bleb site selection. Scientific Reports, 7(1), 6692, 2017. (doi: 10.1038/s41598-017-06875-9)
• Chittor, A. Predator-Prey Interactions Between an Amoeba and a Bacterium from Cedar Swamp. Report, Marine Biological Laboratories, 2017.
• Xu X., Wen X., Veltman D.M., Keizer-Gunnink I., Pots H., Kortholt A., Jin T. GPCR-controlled membrane recruitment of negative regulator C2GAP1 locally inhibits Ras signaling for adaptation and long-range chemotaxis. Proc Natl Acad Sci U S A, 114(47), 2017. (doi: 10.1073/pnas.1703208114)
• Bazzi, H., Soroka, E., Alcorn, H.L., Anderson, K.V. STRIP1, a core component of STRIPAK complexes, is essential for normal mesoderm migration in the mouse embryo. Proceedings of the National Academy of Sciences, 114(51), 2017. (doi: 10.1073/pnas.1713535114)
• Masuda, K., Kitakami, J.-i., Kozasa, T., Kodama, T., Ihara, S. and Hamakubo, T. Visualization of ligand-induced Gi protein activation in chemotaxing cells. The FASEB Journal, 31(3), 2017. (doi: 10.1096/fj.201601102R)
• van Haastert Peter J.M, Keizer-Gunnink Ineke and Kortholt Arjan Coupled Excitable Ras and F-actin activation mediate spontaneous pseudopod formation and directed cell movement. Molecular biology of the cell, 2017. (doi: 10.1091/mbc.E16-10-0733)
• Atherton Paul, Lausecker Franziska, Harrison Andrew, Ballestrem Christoph Low-intensity pulsed ultrasound promotes cell motility through vinculin-controlled Rac1 GTPase activity. Journal of Cell Science, 2017. (doi: 10.1242/jcs.192781)
• Stutchbury Ben, Atherton Paul, Tsang Ricky, Wang De-Yao and Ballestrem Christoph Distinct focal adhesion protein modules control different aspects of mechanotransduction. Journal of Cell Science, 2017. (doi: 10.1242/jcs.195362)
• Mescher Melina, Jeong Peter, Knapp Sina K., Rubsam Matthias, Saynisch Michael, Kranen Marina, Landsberg Jennifer, Schlaak Max, Mauch Cornelia, Tuting Thomas, Niessen Carien M. and Iden Sandra The epidermal polarity protein Par3 is a non-cell autonomous suppressor of malignant melanoma. Journal of Experimental Medicine, 2017. (doi: 10.1084/jem.20160596)
• Zhang, G., Gu, Y., Begum, R., Chen, H., Gao, X., McGrath, J. A., Song, B. Kindlin-1 Regulates Keratinocyte Electrotaxis. Journal of Investigative Dermatology, 136(11), 2016. (doi: 10.1016/j.jid.2016.05.129)
• Srivastava, Nishit, Kay, Robert R and Kabla, Alexandre J. Probing the effect of uniaxial compression on cell migration. bioRxiv, 2016. (doi: https://doi.org/10.1101/082461)
• Veltman, Douwe M and Williams, Thomas D and Bloomfield, Gareth and Chen, Bi-chang. A plasma membrane template for macropinocytic cups.. eLife, 5(e20085): 2016. (doi:10.7554/eLife.20085)
• David P Noren, Wesley H Chou, Sung Hoon Lee, Amina A Qutub, Aryeh Warmflash, Daniel S Wagner, Aleksander S Popel, and Andre Levchenko. Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses.. Science signaling, 9(416):ra20, 2016. (doi:10.1126/scisignal.aad3188)
• Zuzana Klimova, Vojtech Braborec, Miloslava Maninowa, Josef Caslavsky, Michael J. Weber, and Tomas Vomastek. Symmetry breaking in spreading RAT2 fibroblasts requires the MAPK/ERK pathway scaffold RACK1 that integrates FAK, p190A-RhoGAP and ERK2 signaling. BBA - Molecular Cell Research, 2016. (doi:10.1016/j.bbamcr.2016.05.013)
• Son, K., Small, M., Janssen, L. Fluid Shear Stress Modulates Changes in Cell Morphology in Human Eosinophils. In A39. EOSINOPHILIC AIRWAYS DISEASE, American Thoracic Society International Conference Abstracts, pages A1458–A1458. American Thoracic Society, may 2016. (doi:10.1164/ajrccm-conference.2016.193.1_MeetingAbstracts.A1458)
• Maja Marinovic, Marko Sostar, Vedrana Filic, Vlatka Antolovic, and Igor Weber. Quantitative imaging of Rac1 activity in Dictyostelium cells with a fluorescently labelled GTPase-binding domain from DPAKa kinase.. Histochemistry and cell biology, apr 2016. (doi:10.1007/s00418-016-1440-9)
• Laura Norton, Yvonne Lindsay, Arnaud Deladeriere, Tamara Chessa, Herve Guillou, Sabine Suire, John Lucocq, Simon Walker, Simon Andrews, Anne Segonds-Pichon, Oliver Rausch, Peter Finan, Takehiko Sasaki, Cheng-Jin Du, Till Bretschneider, G John Ferguson, Phillip T Hawkins, and Len Stephens. Localizing the lipid products of PI3Kgamma in neutrophils.. Advances in biological regulation, 60:36–45, jan 2016. (doi:10.1124/mol.114.095471)
• M.M. Mahmoud, T. Olszewska, H. Liu, D.M. Shore, D.P. Hurst, P.H. Reggio, D. Lu, D.A. Kendall. (4-(Bis(4-fluorophenyl)methyl)piperazin-1-yl)(cyclohexyl)methanone hydrochloride (LDK1229): a new cannabinoid CB1 receptor inverse agonist from the class of benzhydryl piperazine analogs. Mol Pharmacol., 87(2):197-206, Feb 2015. (doi:10.1124/mol.114.095471)
• Michael E. Bond, Rachel Brown, Charalampos Rallis, Jürg Bähler, and Sara E. Mole. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Microbial Cell, 2(12):466–480, 2015. (doi:10.15698/mic2015.12.241)
• Miura Kota ImageJ定量階梯(第15回)　位置・輝度・形態の複合的な経時変化を測定する(解説). Cell engineering, Vol. 34 No. 2, ISSN: 0287-3796
• G.P. Otto, M. Cocorocchio, L. Munoz, R.A. Tyson, T. Bretschneider, and R.S.B. Williams. Employing Dictyostelium as an advantageous 3Rs model for pharmacogenetic research. Chemotaxis: Methods and Protocols, 2015.
• Marina Pajic, David Herrmann, Claire Vennin, James Rw Conway, Venessa T Chin, Anna-Karin E Johnsson, Heidi Ce Welch, and Paul Timpson. The dynamics of Rho GTPase signaling and implications for targeting cancer and the tumor microenvironment.. Small GTPases, 6(2):123–133, 2015. (doi:10.4161/21541248.2014.973749)
• Nagendran Ramalingam, Christof Franke, Evelin Jaschinski, Moritz Winterhoff, Yao Lu, Stefan Bruhmann, Alexander Junemann, Helena Meier, Angelika A Noegel, Igor Weber, Hongxia Zhao, Rudolf Merkel, Michael Schleicher, and Jan Faix. A resilient formin-derived cortical actin meshwork in the rear drives actomyosin-based motility in 2D confinement.. Nature communications, 6:8496, 2015. (doi:10.1038/ncomms9496)
• Marco Cocorocchio, Robert Ives, David Clapham, Paul L R Andrews, and Robin S B Williams. Bitter tastant responses in the amoeba Dictyostelium correlate with rat and human taste assays.. ALTEX, dec 2015. (doi:10.14573/altex.1509011)
• Shigenori Hirose, Balaji Santhanam, Mariko Katoh-Kurosawa, Gad Shaulsky, and Adam Kuspa. Allorecognition, via TgrB1 and TgrC1, mediates the transition from unicellularity to multicellularity in the social amoeba Dictyostelium discoideum.. Development (Cambridge, England), 142(20):3561–3570, oct 2015. (doi:10.1242/dev.123281)
• Cathryn Weston, Jing Lu, Naichang Li, Kerry Barkan, Gareth O Richards, David J Roberts, Timothy M Skerry, David Poyner, Meenakshi Pardamwar, Christopher A Reynolds, Simon J Dowell, Gary B Willars, and Graham Ladds. Modulation of Glucagon Receptor Pharmacology by Receptor Activity-modifying Protein-2 (RAMP2).. The Journal of biological chemistry, 290(38):23009–23022, sep 2015. (doi:10.1074/jbc.M114.624601)
• Wayne Croft, Charles M Elliott, Graham Ladds, Bjorn Stinner, Chandrasekhar Venkataraman, and Cathryn Weston. Parameter identification problems in the modelling of cell motility.. Journal of mathematical biology, 71(2):399–436, aug 2015. (doi:10.1007/s00285-014-0823-6)
• Christina M Van Itallie, Amber Jean Tietgens, Evan Krystofiak, Bechara Kachar, and James M Anderson. A complex of ZO-1 and the BAR-domain protein TOCA-1 regulates actin assembly at the tight junction.. Molecular biology of the cell, 26(15):2769–2787, aug 2015. (doi:10.1091/mbc.E15-04-0232)
• Diego Reginensi, Patricia Carulla, Sara Nocentini, Oscar Seira, Xavier Serra-Picamal, Abel Torres-Espin, Andreu Matamoros-Angles, Rosalina Gavin, Maria Teresa Moreno-Flores, Francisco Wandosell, Josep Samitier, Xavier Trepat, Xavier Navarro, and Jose Antonio del Rio. Increased migration of olfactory ensheathing cells secreting the Nogo receptor ectodomain over inhibitory substrates and lesioned spinal cord.. Cellular and molecular life sciences : CMLS, 72(14):2719–2737, jul 2015. (doi:10.1007/s00018-015-1869-3)
• Robert Lockley, Graham Ladds, and Till Bretschneider. Image based validation of dynamical models for cell reorientation.. Cytometry. Part A : the journal of the International Society for Analytical Cytology, 87(6):471–480, jun 2015. (doi:10.1002/cyto.a.22600)
• Mariam M Mahmoud, Teresa Olszewska, Hui Liu, Derek M Shore, Dow P Hurst, Patricia H Reggio, Dai Lu, and Debra A Kendall. (4-(Bis(4-fluorophenyl)methyl)piperazin-1-yl)(cyclohexyl)methanone hydrochloride (LDK1229): a new cannabinoid CB1 receptor inverse agonist from the class of benzhydryl piperazine analogs.. Molecular pharmacology, 87(2):197–206, feb 2015. (doi:10.1124/mol.114.095471)
• Grzegorz J Sobczyk, Jun Wang, and Cornelis J Weijer. SILAC-based proteomic quantification of chemoattractant-induced cytoskeleton dynamics on a second to minute timescale.. Nature communications, 5:3319, 2014. (doi:10.1038/ncomms4319)
• Duncan B Wormer, Kevin A Davis, James H Henderson, and Christopher E Turner. The focal adhesion-localized CdGAP regulates matrix rigidity sensing and durotaxis.. PloS one, 9(3):e91815, 2014. (doi:10.1371/journal.pone.0091815)
• Antonia Lock, Rachel Forfar, Cathryn Weston, Leo Bowsher, Graham J G Upton, Christopher A Reynolds, Graham Ladds, and Ann M Dixon. One motif to bind them: A small-XXX-small motif affects transmembrane domain 1 oligomerization, function, localization, and cross-talk between two yeast GPCRs.. Biochimica et biophysica acta, 1838(12):3036–3051, dec 2014. (doi:10.1016/j.bbamem.2014.08.019)
• Susana A Ribeiro, Michael V D'Ambrosio, and Ronald D Vale. Induction of focal adhesions and motility in Drosophila S2 cells.. Molecular biology of the cell, 25(24):3861–3869, dec 2014. (doi:10.1091/mbc.E14-04-0863)
• Richard A Tyson, Evgeny Zatulovskiy, Robert R Kay, and Till Bretschneider. How blebs and pseudopods cooperate during chemotaxis.. Proceedings of the National Academy of Sciences of the United States of America, 111(32):11703–11708, aug 2014. (doi:10.1073/pnas.1322291111)
• A Waheed, M H R Ludtmann, N Pakes, S Robery, A Kuspa, C Dinh, D Baines, R S B Williams, and M A Carew. Naringenin inhibits the growth of Dictyostelium and MDCK-derived cysts in a TRPP2 (polycystin-2)-dependent manner.. British journal of pharmacology, 171(10):2659–2670, may 2014. (doi:10.1111/bph.12443)
• Anna-Karin E Johnsson, Yanfeng Dai, Max Nobis, Martin J Baker, Ewan J McGhee, Simon Walker, Juliane P Schwarz, Shereen Kadir, Jennifer P Morton, Kevin B Myant, David J Huels, Anne Segonds-Pichon, Owen J Sansom, Kurt I Anderson, Paul Timpson, and Heidi C E Welch. The Rac-FRET mouse reveals tight spatiotemporal control of Rac activity in primary cells and tissues.. Cell reports, 6(6):1153–1164, mar 2014. (doi:10.1016/j.celrep.2014.02.024)
• Evgeny Zatulovskiy, Richard Tyson, Till Bretschneider, and Robert R Kay. Bleb-driven chemotaxis of Dictyostelium cells. The Journal of cell biology, 204(6):1027–1044, mar 2014. (doi:10.1083/jcb.201306147)
• Vilela M., Halidi N., Besson S., Elliott H., Hahn K., Tytell J., Danuser G. Chapter Nine - Fluctuation Analysis of Activity Biosensor Images for the Study of Information Flow in Signaling Pathways. Methods in Enzymology, 519:253-76, 2013. (doi:10.1016/B978-0-12-405539-1.00009-9)
• Samuel D R Jefferyes, David B A Epstein, Anne Straube, and Nasir M Rajpoot. A novel framework for exploratory analysis of highly variable morphology of migrating epithelial cells.. Conference proceedings : Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2013:3463–3466, 2013. (doi:10.1109/EMBC.2013.6610287)
• Van Haastert, Peter J. M. (2013) Amoeboid Cells' Protrusions In P. Kraikivski (Ed.) Trends in Biophysics: From Cell Dynamics Toward Multicellular Growth Phenomena, Apple Academic Press.
• Thomas M Hermans, Didzis Pilans, Sabil Huda, Patrick Fuller, Kristiana Kandere-Grzybowska, and Bartosz A Grzybowski. Motility efficiency and spatiotemporal synchronization in non-metastatic vs. metastatic breast cancer cells.. Integrative biology : quantitative biosciences from nano to macro, 5(12):1464–1473, dec 2013. (doi:10.1039/c3ib40144h)
• Katrin Hubner, Irina Surovtsova, Klaus Yserentant, Maria Hansch, and Ursula Kummer. Ca2+ dynamics correlates with phenotype and function in primary human neutrophils.. Biophysical chemistry, 184:116–125, dec 2013. (doi:10.1016/j.bpc.2013.09.006)
• Steven Robery, Richard Tyson, Christopher Dinh, Adam Kuspa, Angelika A Noegel, Till Bretschneider, Paul L R Andrews, and Robin S B Williams. A novel human receptor involved in bitter tastant detection identified using Dictyostelium discoideum.. Journal of cell science, 126(Pt 23):5465–5476, dec 2013. (doi:10.1242/jcs.136440)
• Van Haastert, Peter J. M., (2013). Chapter 10. Amoeboid Cells’ Protrusions. In Pavel Kraikivski (Eds), Trends in Biophysics From Cell Dynamics Toward Multicellular Growth Phenomena (pp. 193–204). Apple Academic Press, Print ISBN: 978-1-926895-36-9
• Guo Xiaohui, Zhao Min, Wang Xiaoyan, Zhao Sanjun, Gao Runchi, Gao Jing, Shi Limin. The Effect of Starvation on Migration and Pseudopod of Dictyostelium discoideum. Chinese Journal of Cell Biology, 2013, 35(4):494–501.
• Eleni Panousopoulou, Richard A Tyson, Till Bretschneider, and Jeremy B A Green. The distribution of Dishevelled in convergently extending mesoderm.. Developmental biology, 382(2):496–503, oct 2013. (doi:10.1016/j.ydbio.2013.07.012)
• Guillaume Jacquemet, Mark R Morgan, Adam Byron, Jonathan D Humphries, Colin K Choi, Christopher S Chen, Patrick T Caswell, and Martin J Humphries. Rac1 is deactivated at integrin activation sites through an IQGAP1-filamin-A-RacGAP1 pathway.. Journal of cell science, 126(Pt 18):4121–4135, sep 2013. (doi:10.1242/jcs.121988)
• Michael Bond, Wayne Croft, Richard Tyson, Till Bretschneider, John Davey, and Graham Ladds. Quantitative analysis of human ras localization and function in the fission yeast Schizosaccharomyces pombe.. Yeast (Chichester, England), 30(4):145–156, apr 2013. (doi:10.1002/yea.2949)
• Alex Carisey, Ricky Tsang, Alexandra M Greiner, Nadja Nijenhuis, Nikki Heath, Alicja Nazgiewicz, Ralf Kemkemer, Brian Derby, Joachim Spatz, and Christoph Ballestrem. Vinculin regulates the recruitment and release of core focal adhesion proteins in a force-dependent manner.. Current biology : CB, 23(4):271–281, feb 2013. (doi:10.1016/j.cub.2013.01.009)
• David A Hughes, Cornelis J Weijer, Yongqiang Qiu, Christine Demore, and Sandy Cochran. Investigating the motility of Dictyostelium discodeum using high frequency ultrasound as a method of manipulation, 2012. (doi:10.1109/ULTSYM.2012.0501)
• Vedrana Filic, Maja Marinovic, Jan Faix, and Igor Weber. A dual role for Rac1 GTPases in the regulation of cell motility.. Journal of cell science, 125(Pt 2):387–398, jan 2012. (doi:10.1242/jcs.089680)
• Arjan Kortholt, Wouter N van Egmond, Katarzyna Plak, Leonard Bosgraaf, Ineke Keizer-Gunnink, and Peter J M van Haastert. Multiple regulatory mechanisms for the Dictyostelium Roco protein GbpC.. The Journal of biological chemistry, 287(4):2749–2758, jan 2012. (doi:10.1074/jbc.M111.315739)
• Till Bretschneider. Cartography of spatio-temporal cellular dynamics. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 1717 – 1718, Chicago, IL, 2011. IEEE. (doi:10.1109/ISBI.2011.5872735)
• Peter J M Van Haastert. Amoeboid cells use protrusions for walking, gliding and swimming.. PloS one, 6(11):e27532, 2011. (doi:10.1371/journal.pone.0027532)
• Leonard Bosgraaf and Peter J M Van Haastert. Quimp3, an automated pseudopod-tracking algorithm.. Cell adhesion & migration, 4(1):46–55, 2010.
• R A Tyson, D B A Epstein, K I Anderson, and T Bretschneider. High Resolution Tracking of Cell Membrane Dynamics in Moving Cells: an Electrifying Approach. Mathematical Modelling of Natural Phenomena, 5(1):34–55, 2010.
• Peter J M Van Haastert. A model for a correlated random walk based on the ordered extension of pseudopodia.. PLoS computational biology, 6(8), 2010. (doi:10.1371/journal.pcbi.1000874)
• Peter J M Van Haastert. A stochastic model for chemotaxis based on the ordered extension of pseudopods.. Biophysical journal, 99(10):3345–3354, nov 2010. (doi:10.1016/j.bpj.2010.09.042)
• Roberto Zanchi, Gillian Howard, Mark S Bretscher, and Robert R Kay. The exocytic gene secA is required for Dictyostelium cell motility and osmoregulation.. Journal of cell science, 123(Pt 19):3226–3234, oct 2010. (doi:10.1242/jcs.072876)
• Leonard Bosgraaf and Peter J M Van Haastert. Navigation of chemotactic cells by parallel signaling to pseudopod persistence and orientation.. PloS one, 4(8):e6842, 2009. (doi:10.1371/journal.pone.0006842)
• Leonard Bosgraaf and Peter J M Van Haastert. The ordered extension of pseudopodia by amoeboid cells in the absence of external cues.. PloS one, 4(4):e5253, 2009. (doi:10.1371/journal.pone.0005253)
• Gunther Gerisch. Imaging actin cytoskeleton dynamics in Dictyostelium chemotaxis.. Methods in molecular biology (Clifton, N.J.), 571:385–400, 2009. (doi:10.1007/978-1-60761-198-1_26)
• Peter J M Van Haastert and Leonard Bosgraaf. Food searching strategy of amoeboid cells by starvation induced run length extension.. PloS one, 4(8):e6814, 2009. (doi:10.1371/journal.pone.0006814)
• Peter J M Van Haastert and Leonard Bosgraaf. The local cell curvature guides pseudopodia towards chemoattractants.. HFSP journal, 3(4):282–286, aug 2009. (doi:10.2976/1.3185725)
• Leonard Bosgraaf, Peter J M van Haastert, and Till Bretschneider. Analysis of cell movement by simultaneous quantification of local membrane displacement and fluorescent intensities using Quimp2.. Cell motility and the cytoskeleton, 66(3):156–165, mar 2009. (doi:10.1002/cm.20338)
• Leonard Bosgraaf, Ineke Keizer-Gunnink, and Peter J M Van Haastert. PI3-kinase signaling contributes to orientation in shallow gradients and enhances speed in steep chemoattractant gradients.. Journal of cell science, 121(Pt 21):3589–3597, nov 2008. (doi:10.1242/jcs.031781)
• Daniel Wustner and Nils J Faergeman. Spatiotemporal analysis of endocytosis and membrane distribution of fluorescent sterols in living cells.. Histochemistry and cell biology, 130(5):891–908, nov 2008. (doi:10.1007/s00418-008-0488-6)
• Jeremie Dalous, Emmanuel Burghardt, Annette Muller-Taubenberger, Franz Bruckert, Gunther Gerisch, and Till Bretschneider. Reversal of cell polarity and actin-myosin cytoskeleton reorganization under mechanical and chemical stimulation.. Biophysical journal, 94(3):1063–1074, feb 2008. (doi:10.1529/biophysj.107.114702)
• G John Ferguson, Laura Milne, Suhasini Kulkarni, Takehiko Sasaki, Simon Walker, Simon Andrews, Tom Crabbe, Peter Finan, Gareth Jones, Shaun Jackson, Montserrat Camps, Christian Rommel, Matthias Wymann, Emilio Hirsch, Phillip Hawkins, and Len Stephens. PI(3)Kgamma has an important context-dependent role in neutrophil chemokinesis.. Nature cell biology, 9(1):86–91, jan 2007. (doi:10.1038/ncb1517)
• Daniel Wustner. Plasma membrane sterol distribution resembles the surface topography of living cells.. Molecular biology of the cell, 18(1):211–228, jan 2007. (doi:10.1091/mbc.E06-05-0445)
• Martin Etzrodt, Hellen C F Ishikawa, Jeremie Dalous, Annette Muller-Taubenberger, Till Bretschneider, and Gunther Gerisch. Time-resolved responses to chemoattractant, characteristic of the front and tail of Dictyostelium cells.. FEBS letters, 580(28-29):6707–6713, dec 2006. (doi:10.1016/j.febslet.2006.11.031)
• Leonard Bosgraaf, Arjen Waijer, Ruchira Engel, Antonie J W G Visser, Deborah Wessels, David Soll, and Peter J M van Haastert. RasGEF-containing proteins GbpC and GbpD have differential effects on cell polarity and chemotaxis in Dictyostelium.. Journal of cell science, 118(Pt 9):1899–1910, may 2005. (doi:10.1242/jcs.02317)
• Dirk Dormann, Gerti Weijer, Simon Dowler, and Cornelis J Weijer. In vivo analysis of 3-phosphoinositide dynamics during Dictyostelium phagocytosis and chemotaxis.. Journal of cell science, 117(Pt 26):6497–6509, dec 2004. (doi:10.1242/jcs.01579)
• Till Bretschneider, James Jonkman, Jana Kohler, Ohad Medalia, Karmela Barisic, Igor Weber, Ernst H K Stelzer, Wolfgang Baumeister, and Gunther Gerisch. Dynamic organization of the actin system in the motile cells of Dictyostelium.. Journal of muscle research and cell motility, 23(7-8):639–649, 2002.
• Annette Muller-Taubenberger, Till Bretschneider, Jan Faix, Angelika Konzok, Evelyn Simmeth, and Igor Weber. Differential localization of the Dictyostelium kinase DPAKa during cytokinesis and cell migration.. Journal of muscle research and cell motility, 23(7-8):751–763, 2002.
• Dirk Dormann, Thorsten Libotte, Cornelis J Weijer, and Till Bretschneider. Simultaneous quantification of cell motility and protein-membrane-association using active contours.. Cell motility and the cytoskeleton, 52(4):221–230, aug 2002. (doi:10.1002/cm.10048)

Papers discussing QuimP

• Piotr Baniukiewicz, Sharon Collier, Till Bretschneider. QuimP: analyzing transmembrane signalling in highly deformable cells. Bioinformatics, bty169. (doi:10.1093/bioinformatics/bty169)
• David J Barry, Charlotte H Durkin, Jasmine V Abella, and Michael Way. Open source software for quantification of cell migration, protrusions, and fluorescence intensities. The Journal of cell biology, 209(1):163–180, apr 2015. (doi:10.1083/jcb.201501081)
• Gillian L. Ryan, Naoki Watanabe, and Dimitrios Vavylonis. Image Analysis Tools to Quantify Cell Shape and Protein Dynamics near the Leading Edge. Cell Structure and Function, 38(1):1 – 7, 2013. (doi:10.1247/csf.12020)
• Erik Meijering, Oleh Dzyubachyk, and Ihor Smal. Methods for cell and particle tracking.. Methods in enzymology, 504:183–200, 2012. (doi:10.1016/B978-0-12-391857-4.00009-4)
• Khaled Khairy and Philipp J Keller. Reconstructing embryonic development.. Genesis (New York, N.Y. : 2000), 49(7):488–513, jul 2011. (doi:10.1002/dvg.20698)
• Yuan Xiong and Pablo A Iglesias. Tools for analyzing cell shape changes during chemotaxis.. Integrative biology : quantitative biosciences from nano to macro, 2(11-12):561–567, nov 2010. (doi:10.1039/c0ib00036a)
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• Kota Miura. Tracking movement in cell biology.. Advances in biochemical engineering/biotechnology, 95:267–295, 2005.

PhD theses

• Collier, Sharon Image based modelling of bleb site selection. Phd thesis, University of Warwick, 2017.
• Maninová, Miloslava Signaling mechanism in nuclear reorientation and its functional significance in cell migration. Phd thesis, Academy of Sciences of the Czech Republic, 2016.
• Atherton, Paul The Role of Ultrasound in Wound Healing. Phd thesis, The University of Manchester, 2016.
• Lockley, Robert Image-Based Modelling of Cell Reorientation. Phd thesis, University of Warwick, 2015.
• Richardson, Kathryn Jane Mechanisms of GPCR signal regulation infission yeast. Phd thesis, University of Warwick, 2014.
• Seyed Morteza Haerihosseini. Voltage Effects on Cells Cultured On Metallic Biomedical Implants. Dissertation, College of Engineering and Computer Science, 2012.
• Croft, Wayne D. A systems and molecular analysis of G protein-mediated signalling. Phd thesis, University of Warwick, 2012.
• Bond, Michael Edward Ras signalling in the fission yeast Schizosaccharomyces pombe. Phd thesis, University of Warwick, 2012.
• Guillaume Jacquemet. Integrin-mediated regulation of small GTPases. Phd thesis, The University of Manchester, 2012.
• Tyson, R. A. The cartography of cell motion. Phd thesis, University of Warwick, 2011.
• Nilsson Lock, Gun Antonia Evelina Mutational and computational characterization of transmembrane domains in the fungal G protein-coupled pheromone receptors STE2 and Mam2. Phd thesis, University of Warwick, 2011.
• Ishikawa-Ankerhold, H. C. Functional Organization of the Actin System in Dictyostelium. Phd thesis, Technische Universität München, 2009.
• Dalous, Jérémie Application de contraintes sur des systèmes complexes artificiels ou vivants : dégonflement de liposomes fonctionnalisés et réorganisation mécanosensible du cytosquelette de cellules dictyostelium. Phd thesis, Université Joseph Fourier (Grenoble), 2006.

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