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Crop Centre in Print

Please find the latest journal publications from the Crop Centre listed below.

Read our articles in the Vegetable Farmer

For a full list of publications from the School of Life Sciences please visit the Latest Journal Publications

IGS region polymorphisms are responsible for failure of commonly used species-specific primers in Fusarium proliferatum isolates from diseased garlic

Plant Pathology feb20Laura Gálvez, John P. Clarkson and Daniel Palmero

Fusarium proliferatum is a globally distributed fungal pathogen that affects a range of crop hosts and is one of the main producers of mycotoxins in foods such as fumonisins. Specific PCR primers are commonly used for detection and identification of this pathogen. The aim of this study was to validate previously published F. proliferatum‐specific primers targeting the IGS region and characterise intraspecific variation and homologous recombination events for isolates obtained from diseased garlic bulbs in Spain. Our results suggest that the IGS region may be too variable as a reliable target for F. proliferatum‐specific identification.

Plant Pathology. February 2020

Thu 19 Mar 2020, 12:56

Genomics Evolutionary History and Diagnostics of the Alternaria alternata Species Group Including Apple and Asian Pear Pathotypes

 Frontiers in MicrobiologyAndrew D Armitage, Helen M Cockerton, Surapareddy Sreenivasaprasad, James Woodhall, Charles R Lane, Richard J Harrison and John P Clarkson 

The Alternaria section alternaria (Alternaria alternata species group) represents a diverse group of saprotroph, human allergens, and plant pathogens. Alternaria taxonomy has benefited from recent phylogenetic revision but the basis of differentiation between major phylogenetic clades within the group is not yet understood. Furthermore, genomic resources have been limited for the study of host-specific pathotypes. We report near complete genomes of the apple and Asian pear pathotypes as well as draft assemblies for a further 10 isolates representing Alternaria tenuissima and Alternaria arborescens lineages. Our findings allow identification and differentiation of apple, pear, and strawberry pathotypes, providing new tools for pathogen diagnostics.

Frontiers in Microbiology. January 2020

Mon 24 Feb 2020, 12:54

Basal Rot of Narcissus: Understanding Pathogenicity in Fusarium oxysporum f. sp. narcissi

 

Frontiers in MicrobiologyAndrew Taylor, Andrew D Armitage, Claire Handy, Alison C Jackson, Michelle T Hulin, Richard J Harrison and John P Clarkson

Fusarium oxysporum is a globally distributed soilborne fungal pathogen causing root rots, bulb rots, crown rots and vascular wilts on a range of horticultural plants. Pathogenic F. oxysporum isolates are highly host specific and are classified as formae speciales. Narcissus is an important ornamental crop and both the quality and yield of flowers and bulbs can be severely affected by a basal rot caused by F. oxysporum f. sp. narcissi (FON). This is the first study to characterise molecular variation in FON and provide an analysis of the FON genome. Identification of expressed genes potentially associated with virulence provides the basis for future functional studies and new targets for molecular diagnostics.

Frontiers in Microbiology. Dec 2019

Mon 27 Jan 2020, 15:07

Transcriptome and organellar sequencing highlights the complex origin and diversification of alloteraploid Brassica napus

 Nature Communications dec19Hong An, Xinshuai Qi, Michelle L. Gaynor, Yue Hao, Sarah C. Gebken, Makenzie E. Mabry, Alex C. McAlvay, Graham R. Teakle, Gavin C. Conant, Michael S. Barker, Tingdong Fu, Bin Yi, and J. Chris Pires

Brassica napus, an allotetraploid crop, is hypothesized to be a hybrid from unknown varieties of Brassica rapa and Brassica oleracea. Despite the economic importance of B. napus, much is unresolved regarding its phylogenomic relationships, genetic structure, and diversification. Here we conduct a comprehensive study among diverse accessions from 183 B. napus (including rapeseed, rutabaga, and Siberian kale), 112 B. rapa, and 62 B. oleracea and its wild relatives. This study highlights the complex origin and evolution of B. napus providing insights that can further facilitate B. napus breeding and germplasm preservation.

Nature Communications.December 2019

Wed 22 Jan 2020, 09:26

Susceptibility of Myzus persicae, Brevicoryne brassicae and Nasonovia ribisnigri to Fungal Biopesticides in Laboratory and Field Experiments

Insects journal

Gill Prince, Dave Chandler

The aim of this study was to evaluate the potential of entomopathogenic fungi (EPF) for the control of aphid pests of field vegetable crops.

Four biopesticides based on the EPF Beauveria bassiana (Botanigard ES and Naturalis L), Cordyceps fumosorosea s.l. (Preferal WG), and Akanthomyces dipterigenus (Vertalec) were evaluated in a laboratory bioassay against peach-potato aphid Myzus persicae, cabbage aphid Brevicoryne brassicae, and currant-lettuce aphid Nasonovia ribisnigri.

There was significant variation in the spore dose provided by the products, with Botanigard ES producing the highest dose (639 viable spores per mm2). Botanigard ES also caused more mortality than the other products. Combining Vertalec with the vegetable oil-based adjuvant Addit had an additive effect on the mortality of B. brassicae. All fungal products reduced the number of progeny produced by M. persicae but there was no effect with B. brassicae or N. ribisnigri. When aphid nymphs were treated with Botanigard ES and Preferal WG, both products reduced population development, with up to 86% reduction occurring for Botanigard ES against M. persicae. In a field experiment, Botanigard ES sprayed twice, at seven-day intervals, against B. brassicae on cabbage plants, reduced aphid numbers by 73%. In a second field experiment with B. brassicae, M. persicae, and N. ribisnigri, Botanigard ES reduced populations of B. brassicae and N. ribisnigri but there was no significant effect on M. persicae.

Special issues Integrated Pest Management Strategies for Horticultural Crops - Insects 2020 (ISSN 2075-4450)

Wed 22 Jan 2020, 09:14

A future workforce of food-system analysts - Nature Food

A comment piece in the newly launched Nature Food journal puts the IFSTAL approach to creating food-system thinkers in the spotlight.

The piece, authored collaboratively by members of the IFSTAL team, including Rosemary Collier from Warwick's School of Life Sciences, sets out the case for a systems approach to challenges in the food system and highlights the aspirations of the programme.

IFSTAL’s successes to date – including the engagement of 1,500 students from 45 different university departments as well as the programme’s well established overseas activity – are also laid out.

The article, A future workforce of food-system analysts, is available to read on the Nature Food website.

Fri 20 Dec 2019, 07:30

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